Name: Alberto Gil Jimenez
Type: User
Company: Netherlands Cancer Institute
Bio: Bioinformatics PhD candidate at NKI | M.Sc. Bioinformatics and Systems Biology | Data Science background | Physics B.Sc. & Chemistry B.Sc.
Location: The Netherlands
Blog: www.linkedin.com/in/alberto-gil
Alberto Gil Jimenez's Projects
Introduction to statistics and machine learning for bioinformatics
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
Generates a small report of the banking expenses by category
Bioinformatics summer school @UCLouvain la Neuve, Belgium
Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie, TCGA
A list of deep learning implementations in biology
A hotel recommender system based on a Machine Learning and Data Mining approach
Flexible gene set enrichment analysis
README to follow along with the GCP workshop from HMF
Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.
Workflows for analyzing data with the GeomxTools package and subsequent GeoMx related packages
Repository for google hash code competition 2018 (qualification phase). https://hashcode.withgoogle.com/
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
Static Code Analysis for R
Minimal is a Jekyll theme for GitHub Pages
MOFA training resources
Code to reproduce the findings from the 'Spatial analysis paper NABUCCO'
Tools for NanoString Technologies nCounter Technology for reading RCC files into an ExpressionSet derived object, QC and normalization.
Nextflow workshop materials 27 May 2021
a small python program for parsing TCGA clinical XMLs to CSV format
Machine Learning predictor of the continental origin using SNP data
sub-package of spatstat containing core functionality for data analysis and modelling
VU course 2017
Strelka2 germline and somatic small variant caller
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Config files for my GitHub profile.
Calculate the TSE score to predict response to ICIs