tshauck/gcgc

An ML-feature processing library for biological sequences.

gcgc's Issues

Issue with runing the QuickStart

• GCGC version: 0.12.1
• Python version: 3.6.9
• Operating System: Ubuntu 18.04

Description

I am trying to replicate the example in the QuickStart...

from gcgc import KmerTokenizer

kmer_tokenizer = KmerTokenizer(alphabet="unambiguous_dna")
encoded = kmer_tokenizer.encode("ATCG")
print(encoded)

What I Did

I installed the package and run the following only to get this error:

---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-9-12027d1b4fb4> in <module>
      1 from gcgc import KmerTokenizer
      2 
----> 3 kmer_tokenizer = KmerTokenizer(alphabet="unambiguous_dna")
      4 encoded = kmer_tokenizer.encode("ATCG")
      5 print(encoded)

TypeError: __init__() got an unexpected keyword argument 'alphabet'

I would appreciate your help with this.
thanks!