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predictdb-tutorial

Tutorial for running the PredictDB pipeline with GEUVADIS data

predictdb_pipeline_gtex_v7

PredictDB Pipeline for GTEx v7 data

predictdbpipeline

predixcan

PrediXcan Project

prsice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

psychencode_data_analysis

Pipelines and Scripts used in psychENCODE project (RNA-seq, ATAC-seq)

ptrs-tf

Building PTRS model using TensorFlow

pythonlearning

rfmix

RFMIX - Local Ancestry and Admixture Inference Version 2

riboseq_pipeline

A pipeline to process RiboSeq fastqs

ricopili

Main ricopili repo for public releases

rnaseq_pmbrain_asd

Post-mortem brain RNAseq code

rosmapmqtl

rsem_tutorial

A short tutorial on how to use RSEM

scenicprotocol

A scalable SCENIC workflow for single-cell gene regulatory network analysis

screpertoire

A toolkit for single-cell immune profiling

seurat

R toolkit for single cell genomics

shared-molecular-neuropathology-across-major-psychiatric-disorders-parallels-polygenic-overlap

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

singlecell_neuroseq_paper

Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

skat

:exclamation: This is a read-only mirror of the CRAN R package repository. SKAT — SNP-Set (Sequence) Kernel Association Test

slidex

Convert PowePoint Slides to xaringan (remark.js) Slides

susie-paper

Experiments on SuSiE ("sum of single effects") regression.

systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

t1d-immunochip-2020

Analysis and supplemental data for ImmunoChip analysis of type 1 diabetes

twn_tsn

Transcriptome-wide network

twosamplemr

R package for performing 2-sample MR using MR-Base database

uk_biobank_gwas

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

variant-annotation

Use cloud technology to annotate human sequence variants in parallel.

wgcna

:exclamation: This is a read-only mirror of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis. Homepage: http://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/