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Infer cell-cell communications based on feed-forward neural network

License: GNU General Public License v3.0

R 100.00%
single-cell-rna-seq cell-cell-communication cell-cell-interaction single-cell-analysis deep-learning feed-forward-neural-networks

scdeeptalk's Introduction

scDeepTalk

Infer contact-dependent cell-cell communications with ligand-receptor interactions based on a deep learning model of feed-forward neural network.

  • data/example_data.RData mouse intestine data for training the model
  • model/mouse_intestine.rds pre-trained model of mouse intestine
  • R/scDeeptalk.R R script for run scDeepTalk pipeline

Dependency

  • R > 3.6
  • Packages: h2o

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