lncrna-target-gene's Introduction
test2.R is the code for identifing lncRNA target genes. all.lncrna.txt and allgene.txt are the lncRNAs and genes' names. gene-net1.txt is the gene-gene interaction data which is downloaded from humannetv2.0 (upzip this file) The features of lncRNAs and gene have already been extracted as lncrna.feature.txt and gene.feature.txt. lncrna-gene.net.txt is the potential correlation between lncRNAs and genes. This is obtained based on their interactions with miRNAs. lncrna_target.txt is the high-throughput known data from LncRNA2Target v2.0 test2.R includes four parts. 1.normalize features of gene and lncRNAs. 2.Encode gene network by GCN 3. generate negative sample set. 4. Classify by CNN
lncrna-target-gene's People
lncrna-target-gene's Issues
hi,there, I am wondering where I could get the low-throughput dataset
I have run your code and got the dataset of the high-throughput dataset, but I am wondering where I could get the low throughput dataset?
Thanks in advance.
How to get the adjacency matrix of genes
I want to know how you can get the adjacency matrix, or how to implement the specific code, thank you
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