lncrna-target-gene's Introduction
test2.R is the code for identifing lncRNA target genes. all.lncrna.txt and allgene.txt are the lncRNAs and genes' names. gene-net1.txt is the gene-gene interaction data which is downloaded from humannetv2.0 (upzip this file) The features of lncRNAs and gene have already been extracted as lncrna.feature.txt and gene.feature.txt. lncrna-gene.net.txt is the potential correlation between lncRNAs and genes. This is obtained based on their interactions with miRNAs. lncrna_target.txt is the high-throughput known data from LncRNA2Target v2.0 test2.R includes four parts. 1.normalize features of gene and lncRNAs. 2.Encode gene network by GCN 3. generate negative sample set. 4. Classify by CNN
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