blab/blotter

bedford lab research

blotter's Issues

Change font

Hello. Thanks for your website, its an amazing system! :D

Tiny question: the default font doenst render turkish characters very well, is there an easy way to change it?

can not work for command line "bundle exec jekyll build"

@trvrb I want to use blotter to build my website, and when I run the command line "bundle exec jekyll build",
it reports to me 👍:
lixingguangtekiMacBook-puro:blotter lixingguang$ bundle exec jekyll build
Configuration file: /Users/lixingguang/blotter/_config.yml
Source: /Users/lixingguang/blotter
Destination: /Users/lixingguang/blotter/_site
Incremental build: disabled. Enable with --incremental
Generating...
Warning: parse error in /Users/lixingguang/blotter/_site/talks/reveal-v2/css/print/pdf.css. Don't panic - copying initial file
Details: parse error on value "@page " (error)
Warning: parse error in /Users/lixingguang/blotter/_site/talks/reveal-v2/css/theme/default.css. Don't panic - copying initial file
Details: parse error on value ":not(" (error)
Warning: parse error in /Users/lixingguang/blotter/_site/talks/reveal-v2/css/theme/trvrb.css. Don't panic - copying initial file
Details: parse error on value ":not(" (error)
Warning: parse error in /Users/lixingguang/blotter/_site/talks/reveal-v3/css/reveal.css. Don't panic - copying initial file
Details: parse error on value ":not(" (error)
done in 11.747 seconds.
Auto-regeneration: disabled. Use --watch to enable.

Project page not showing up?

Dear Bedford Lab, I'm super excited to try your lab website template! When I tried to replicate the project page, I experienced the following problem. I followed the advice on running ruby _scripts/update-and-preprocess.rb and built my website. The project page shows up correctly when I viewed the website locally http://localhost:4000/, but always see the error message "Sorry, this page does not exist." when I try to view each project page on my customized domain. Strangely, all other aspects of the website work well and the project page is the only issue. I'm curious if any of you can offer any advice. Thank you for your time!

Fix preprocess script to not break links

Currently, the preprocess script will break at

https://github.com/blab/blotter/blob/master/_scripts/preprocess-markdown.rb#L69

If a link looks like:

[iPython notebook](http://github.com/trvrb/sismid/blob/master/selection/mutation-drift-selection.ipynb)

It works for the canonical

[iPython notebook](mutation-drift-selection.ipynb)

Fix the script to not break on absolute rather than relative URLs.

The tag `eqinline` is not a recognized Liquid Tag

Hello. I am trying to customize your site's layout for our own lab site and have successfully forked the repo into my directory. I am able to build the site locally with Jekyll but I keep getting the error below from Github when building the live site. I have tried to fix this error by deleting files but that is not working. More files keep popping up with this error. Do you have any suggestions please? Thank you!

The tag eqinlineon line 189 inguide/_posts/2013-10-26-style.md is not a recognized Liquid tag.

Juhye Lee's papers show up on Jover Lee's team page

See the bottom of https://bedford.io/team/jover-lee/.

This looks like the code that's responsible for doing the lastname + first initial matching that's causing the problem:

blotter/_layouts/member.html

Lines 103 to 122 in 81d0c17

	{% assign lastname = member.title | split: ' ' | last %}
	{% assign firstinitial = member.title | split: ' ' | first | slice: 0 %}
	{% assign searchstring = lastname | append: ' ' | append: firstinitial %}
	{% for paper in site.categories.papers %}
	{% if paper.authors contains searchstring %}
	{% assign papersq = true %}
	{% endif %}
	{% endfor %}
	{% if papersq == true %}
	<div class="bigspacer"></div>
	<div class="head">Papers</div>
	<div class="spacer"></div>
	{% for paper in site.categories.papers %}
	{% if paper.authors contains searchstring %}
	<p><a href="{{ paper.url }}" class="off">{{ paper.title }}</a>
	{% endif %}
	{% endfor %}
	{% endif %}