edawson Goto Github PK
Name: Eric T. Dawson
Type: User
Company: @nvidia
Bio: Senior Scientist in Genomics, HPC and AI @nvidia
Twitter: erictdawson
Location: New York City
Blog: www.erictdawson.com
Eric T. Dawson's Projects
gatk3-germline-snps-indels
Workflows for germline short variant discovery with GATK3
gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
gene_lists
List of gene lists for genomic analyses.
genelist_to_bed
Convert a list of genes to a bedfile
gfa-spec
Graphical Fragment Assembly (GFA) Format Specification
gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
ggdark
Dark mode for ggplot2 themes
ggsv
Simulation scripts and other items for comparing SV callers
glnexus
Scalable gVCF merging and joint variant calling for population sequencing projects
goanna-connect
Adapter script to integrate AgBase GoAnna resource with iPlant DE
gram
Parse, manipulate, and emit GRAM (graph read alignment/map format)
gssw
efficient alignment of strings to partially ordered string graphs
helpy
A random collection of python scripts which are easier than fighting the equivalent shell commands
hgsvc
building variation graphs from hgsvc data
hgvm-builder
Tool to build a (Human) Genome Variation Map from a set of data sources
homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers
hpv_minion_analysis
Contains scripts used to analyze HPV samples sequenced on ONT minIONs.
hpv_pangenome
Files and scripts for generating a pan-genome reference graph for learning models.
huey
a little task queue for python
hugo-serif-theme
Serif is a modern business theme for Hugo.
iitii
Implicit Interval Tree with Interpolation Index
interleave-fastq
interleaves fastq files (also gzipped ones!)
iplant-bwa-index
Contains all of the bits and pieces needed to integrate BWA indexing into the iPlant environment.
iplant-bwa-mem-parallel
A wrapper for increasing scaling of BWA.
iplant-gatk-qc
The scripts and JSON description necessary to produce a working iPlant version of GATK Realignment/Recalibration.
iplant-iastate
IAState Genomics Pipeline.
iplant-platypus
Contains the necessary files to create a working version of Platypus on iPlant
iplant-samtools-mpileup
The scripts and JSON descriptions necessary to run samtools mpileup on Stampede using iPlant
ips4o
In-place Parallel Super Scalar Samplesort (IPS⁴o)
jabba
MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
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