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Eric T. Dawson's Projects

svaha2 icon svaha2

Linear-time, low-memory construction of variation graphs

svanalyzer icon svanalyzer

Tools for the analysis of structural variation in genomes

svsim icon svsim

Simulation toolbox for structural variations.

swarm icon swarm

Swarm is a script designed to simplify submitting a group of commands to the Biowulf cluster.

telomerecat icon telomerecat

Telomerecat: The telomere computational analysis tool

telseq icon telseq

A software for calculating telomere length

tensorflow icon tensorflow

Open source software library for numerical computation using data flow graphs.

thetools icon thetools

A semi-curated list of genomegraph tools!

tidysig icon tidysig

A tidyverse-style package for plotting mutational signatures and context counts.

tinyfa icon tinyfa

A header-only C++ FASTA parser and indexer

tinygfa icon tinygfa

A header-only GFA file indexer (think .fai for GFA files)

tinyvcf icon tinyvcf

(The beginnings of) A small VCF parser with an emphasis on speed and simplicity.

variantbam icon variantbam

Filtering and profiling of next-generational sequencing data using region-specific rules

variantworks icon variantworks

DL based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/

vcflib icon vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

vg icon vg

tools for working with variation graphs

vg_d icon vg_d

A docker file for vg (github.com/vgteam/vg), linked to an automatic build on Dockerhub.

vg_learn icon vg_learn

Datasets and scripts and general things for building machine learning tools with VG.

vg_pill icon vg_pill

Contains source code for vg dependencies that are often installed via a package manager.

wham icon wham

Structural variant detection and association testing

xg icon xg

succinct labeled graphs with collections and paths

zstr icon zstr

A C++ header-only ZLib wrapper

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