edawson Goto Github PK

nim-kmer

DNA kmer operations for nim

notipyer

Notification Triggers for Python

novobreak-bin

A dummy repo for holding novobreak binaries

nthash

ntHash: recursive nucleotide hashing

ntjoin

🔗Genome assembly scaffolder using minimizer graphs

paragraph

Graph realignment tools for structural variants

parliament2

Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

pasha

parallel algorithms for small hitting set approximations

pbh5tools

A swiss-army knife for interrogating PacBio® HDF5 files (cmp.h5, bas.h5)

picosha2

a header-file-only, SHA256 hash generator in C++

pil

Language-independent and schema-agnostic columnar memory format for genomics data

pliib

A hacky little C++ library that holds some useful functions.

presig

Convert MAF files to formats used as input to mutational signature programs including SigProfiler

protocol-buffers-stream

Streaming protocol buffers for Node.js

py-upset

A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.

pyfaidx

Efficient pythonic random access to fasta subsequences

pyrov

CLI tools for writing ROV data provenance files

pysplit

pystream-protobuf

Python implementation of stream library for streaming google protocol buffer objects

python-sortedcontainers

Python Sorted Container Types: Sorted List, Sorted Dict, and Sorted Set

r2-public-worker

Cloudflare Worker to make a R2 Bucket public!

raptr-ls4

rbread

Header-only, gzread-like reader for gzip, bz2, and xz.

ref_vcf_builder

A little bit of BASH to create a single standard reference VCF from several smaller ones.

rkmh

Classify sequencing reads using MinHash.

rkmh2

Fast read filtering using MinHash

rkmh_paper_response

Code for running simulations for the RKMH paper review response

rkmh_sim_data

Example simulated data for rkmh (viral coinfection analysis using a MinHash toolkit)

rnaseq_tutorial_v1

Archive of original RNAseq.wiki tutorial that accompanied PLoS Comp Bio paper

rov-spec

A pROVenance file format for data lineage (and universal computability)