Repositories under this personal account contain mostly new/experimental projects.
Completed/released projects now live at https://github.com/UU-cellbiology
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
License: BSD 2-Clause "Simplified" License
Repositories under this personal account contain mostly new/experimental projects.
Completed/released projects now live at https://github.com/UU-cellbiology
Currently, all channels are used in semi-auto trace mode, it would be nice to have a selection of channel(s) to trace on (or use the scaled intensities of the visualization for the hessian transform?)
In some images, scaling the brightness/contrast (with the tool under hotkey s) causes all visualization to disappear.
Have you considered adding a button [Straighten], which would render the intensities along the filament in a new coordinate system where the filament would run straight long the x axis?
Would be good to have the calibration in the csv to make further processing straightforward.
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