Comments (5)
Initial branch to contribute to IUC tools repo now on my fork at https://github.com/pjbriggs/tools-iuc/tree/trimmomatic
from galaxy-tools.
Before making a PR to tools-iuc
I wanted to be clear about what happens wrt to the toolshed: in the .shed.yml
file I've set the owner as iuc
, which I assume means that a new iuc/trimmomatic
tool would be created on the toolshed.
Is this the accepted way to donate existing tools to IUC? and if so then is there a path to managing migrating for users of the current version? The CONTRIBUTING
file mentions "abandoned" tools but doesn't give any further details.
@bernt-matthias do you have comments/advice? Thanks!
from galaxy-tools.
I would not change the owner but leave it as is. Instead you can grant the IUC the permission to push to the original TS repo.
For widely used used tools changing the owner would create to much confusion, since iuc/trimmomatic
would be treated as a different too (ie. it would destroy the tool lineage).
from galaxy-tools.
Thanks - I've now created the PR at galaxyproject/tools-iuc#5698
As noted there, I've kept pjbriggs
as the owner but IUC should now also have permission to administer the tool on the toolshed (I wasn't able to access the test toolshed to also make the change there, however maybe that's not important).
There's also a new PR #92 in this repo which moves the tool to the legacy
dir in anticipation of the transfer to the IUC repo.
Thanks for all your help so far @bernt-matthias! Please let me know if there's anything else I need to do at this stage.
from galaxy-tools.
Trimmomatic now relocated to IUC tools repository, and files moved to legacy in this repository.
from galaxy-tools.
Related Issues (20)
- Travis-CI builds fail for macs21 tool (Galaxy 17.01) HOT 1
- Is trimmomatic synced with toolshed? HOT 5
- Migrate tools and Travis-CI tests to conda HOT 4
- Pal_finder fails if number of requested N-mers is zero but (N+1)-mers is non-zero
- Trimmomatic wrapper does not catch java exception HOT 1
- Pal_finder: improve error message when no microsatellites found
- Pal_finder: enable tool to operate on a subset of read pairs
- cistrome BETA HOT 2
- trimmomatic input types (and phred64) HOT 5
- Trimmomatic version 0.38 is available HOT 2
- Trimmomatic: Separate report output for use in MultiQC? HOT 2
- Weeder2: bioconda updates break tool
- motif_tools: Travis-CI tests frequently time out fetching [email protected] HOT 3
- Update Travis CI tests to use Python 3.5 or higher
- Trimmomatic Galaxy tool: zlib issue when using container HOT 6
- Update Trimmomatic tool to version 0.39 HOT 2
- Trimmomatic error: unable identify Phred quality encoding HOT 2
- Trimmomatic: input dataset names are incorrectly reported in output dataset titles?
- Trimmomatic: use Galaxy datatype to set quallity encoding HOT 6
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from galaxy-tools.