Comments (1)
Better not to do it for now, because this is something that could be added for any workflow and not only hybrid, thus ... the pipeline is still not ready and it may not fit the pipeline's design.
Closing for now, may re-open in the future if really desired to have it.
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Related Issues (20)
- add trycycler
- add 3 hybrid strategy HOT 1
- Requesting support with error "Explicit 'name separator' in class" HOT 4
- update tool versions
- Add skip parameter for sreads polishers and fix multiqc report names HOT 1
- Incomplete pipeline and different errors when using nanopore reads files with different sizes (900 mb vs 11Gb) HOT 18
- Add hifiasm for long reads assemble HOT 5
- 100% missing in Busco HOT 4
- Enhance documentation (paper review) HOT 2
- Add example of non-bacterial dataset analysis (paper review) HOT 1
- problem with longreads_only assembly HOT 4
- Add a simple parameter to handle starting memory settings HOT 1
- add automatic samplesheet for bacannot
- add the possibility of running directly from SRA IDs
- When not giving `--genome_size` for long reads, message goes to log and not console HOT 1
- allow hifiasm to use hi-c and parental data
- should hifiasm be executed only when user says reads are high quality? HOT 1
- Enhance polishing and downstream as hybracter
- error in running MpGAP with SRR8482585_30X_{1,2}.fastq.gz and SRX5299443_30X.fastq.gz HOT 4
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