100% missing in Busco

[scintilla9]

100% missing in Busco

[fmalmeida]

Hi @scintilla9 ,
Thanks for reporting it. I think it might have happened in the last docker image update I made.

I will take a look at this and let you know. Glad tk hear that the assembly is good.

[fmalmeida]

Hi @scintilla9 ,
Thank you very much for reporting this error. I have found the problem, and realised that I have done a major mistake a few weeks ago, which I have merged a branch with new features (considered dev) in the master branch instead of the dev branch.

Luckly, I was able to use the latest tagged version, v3.1.4 to revert the master branch back to its right version and passed on the developmental code to the dev branch where it always belonged.

So now, things are supposed to be correct:

• master branch and v3.1.4 working fine
• dev branch having the busco error which is fine, because I am still working on it and the docker image is not final.

Once again, thanks for reporting it.

Can you give a try using one of the following options so I can be sure it is fine and close this ticket?

• nextflow run fmalmeida/mpgap -r master -latest
• nextflow run fmalmeida/mpgap -r v3.1.4 -latest

[scintilla9]

Hi @fmalmeida ,

Sorry for the late reply, I was unavailable for testing the pipeline until yesterday.
The master branch / v3.1.4 works fine! I got busco result with 95% completeness.

Thanks for fixing it.

[fmalmeida]

Thanks. I will close the ticket.

Also added some merging rules to only allow PRs to merge code in master to try to avoid this problem in the future.

Thanks for reporting it.