Related Issues (20)
- add trycycler
- add 3 hybrid strategy HOT 1
- Requesting support with error "Explicit 'name separator' in class" HOT 4
- update tool versions
- add homopolish tool HOT 1
- Add skip parameter for sreads polishers and fix multiqc report names HOT 1
- Incomplete pipeline and different errors when using nanopore reads files with different sizes (900 mb vs 11Gb) HOT 18
- Add hifiasm for long reads assemble HOT 5
- 100% missing in Busco HOT 4
- Enhance documentation (paper review) HOT 2
- Add example of non-bacterial dataset analysis (paper review) HOT 1
- problem with longreads_only assembly HOT 4
- Add a simple parameter to handle starting memory settings HOT 1
- add automatic samplesheet for bacannot
- When not giving `--genome_size` for long reads, message goes to log and not console HOT 1
- allow hifiasm to use hi-c and parental data
- should hifiasm be executed only when user says reads are high quality? HOT 1
- Enhance polishing and downstream as hybracter
- error in running MpGAP with SRR8482585_30X_{1,2}.fastq.gz and SRX5299443_30X.fastq.gz HOT 4
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