Error making vcfrenamesamples

[lindenb]

Error making vcfrenamesamples

[lindenb]

Your version of java is NOT the right one = (NOT 1.7) . Please check your PATH.

The diamond notation

LinkedHashSet<> ...

is only supported in java 1.7 see 'Diamond' in http://docs.oracle.com/javase/tutorial/java/generics/types.html

And you can see at http://docs.oracle.com/javase/7/docs/api/java/util/zip/GZIPOutputStream.html#GZIPOutputStream%28java.io.OutputStream,%20boolean%29

the constructor GZIPOutputStream(file,boolean) was created for java 1.7

[aslett1]

Ah, that's annoying. We'd set $JAVA_HOME to point to 1.7 but the path version still defaults to 1.6.

[lindenb]

try

export PATH=${JAVA_HOME}/bin:${PATH}

[aslett1]

I've done exactly that and it works fine. Thanks!!

On Tue, 17 Mar 2015, Pierre Lindenbaum wrote:

try

export PATH=${JAVA_HOME}/bin:${PATH}

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