Issue with translating genes on complement strand

[nbisweden]

Issue with translating genes on complement strand

[Juke34]

Interesting we will look at it. Could you provide the fasta for the sequence BANY00001 ?

Thank you for having pointed that.

[reubwn]

No problem, here's the file. Cheers!

BANY00001.fa.gz

[Juke34]

It looks like it's due to your odd gff3. Indeed, when you have a gene on the minus strand, the sub-features (exons and cds) are inverse sorted. I will add a fix to systematically sort those sub-features when we go through them to avoid such cases.

[reubwn]

Ah, gff3, the file format with no fixed format... This gff was downloaded directly from an ensembl database (ensembl.lepbase.org) too. Could you say what exactly is odd about it?

Thanks for the fix!

[Juke34]

Usually all the cds or exon features are sorted in increasing order of their locations, no matter their strand.

[Juke34]

Issue fixed.