Add support for sequencing coverage esimates with nonpareil

[jfy133]

Add support for sequencing coverage esimates with nonpareil

[Midnighter]

I was thinking, it would be awesome to have a QC step that shows an overview of where classified reads map on the identified reference genomes. Can nonpareil generally do that or does it only deliver estimates on how much coverage was achieved?

[jfy133]

Maybe should update the module to conditionally unzip within it, rather than expected it outside

[jfy133]

No, it purely aligns reads to themselves to check for redundancy essentially.

I'm not really sure there is a tool that does what you're asking for at a metagenomic level...

[jfy133]

Done in in the pr that GitHub mobile is not finding stm