phonchi/cryo-ralib

cryo-ralib's Issues

error with --CTF

Dear developers,

I tried to run cryoRAlib using the --CTF option for CTF correction and I got the error I copy below.

Best regards,
Erney

User function : ref_ali2d
Traceback (most recent call last):
File "./test_mref_cheng_yu_bdb_cuda.py", line 1617, in
main()
File "./test_mref_cheng_yu_bdb_cuda.py", line 1532, in main
cuda_device_occ=0.9 )
File "./test_mref_cheng_yu_bdb_cuda.py", line 429, in mref_ali2d_gpu
data[im] = filt_ctf(data[im], data[im].get_attr("ctf"), binary = True)
NameError: global name 'filt_ctf' is not defined

Installation problems

I have read your article about the method and I find it very interesting. I would like to use it.
I have tried to install it but I am having some problems.

SPHIRE installation: .................................................check
SPARX v5.0 (GITHUB: 2021-03-08 11:36)

MPI available: .......................................................check
Traceback (most recent call last):
File "lib_check.py", line 100, in
sys.exit( main(sys.argv) )
File "lib_check.py", line 67, in main
ver = [ entry for entry in ver.split("\n") if entry != "" ]
TypeError: a bytes-like object is required, not 'str'