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WDL pipelines for the Sentieon tools

License: BSD 2-Clause "Simplified" License

WDL 85.94% Dockerfile 3.74% Python 10.31%
ccdg functional-equivalent-pipeline sentieon fastq2vcf wdl-workflow

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sentieon-wdl's Issues

Duplicate IF Statement

Sentieon-WDL/ccdg_fastq2vcf.wdl

Line 282 in 87648bb

if [[ ${dollar}{#first_fastq[@]} -ne ${dollar}{#read_groups[@]} ]]; then

It appears you are performing a duplicate check for read groups. I believe you are inteneding to make sure that the number of input Fastq files matches?

 if [[ ${dollar}{#first_fastq[@]} -ne ${dollar}{#second_fastq[@]} ]]; then

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