Comments (3)
vladsavelyev
commented on May 31, 2024
Hi Ridwan,
I'm actually having the same error (and VEP continues running so I didn't even pay attention before). Not really sure how loftee installation works; I basically just copied this line from the Dockerfile into the conda recipe and assumed it will work with this tgz archive somehow.
Let me investigate :)
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vladsavelyev
commented on May 31, 2024
Totally forgot to update on this issue. Perl-BigFile library is now on conda: bioconda/bioconda-recipes#18392 Meaning that LofTee should work properly with the most recent version of PCGR/CPSR (this pull request have the fixes sigven/pcgr#98). Works on my side. So updating conda packages should fix the issue:
conda install -c pcgr -c conda-forge -c bioconda "pcgr==0.8.4.4" "cpsr==0.5.2.2"
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ridwan-shaikh
commented on May 31, 2024
Thanks Vlad. Tried it this morning and it works perfectly.
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