vjcitn Goto Github PK

ca30knotebook

A notebook on 30000 cancer transcriptomes, based on HDF scalable data service

ccler6

lightweight package for interfacing to CCLE

cdnmdocker

issue tracker for docker at CDNM

cellsurvassay

Clonogenic Survival Analysis in R made easy!

cellxgenedp

R interface to the cellxgene data portal

cgcr

scratch repository for creating and sharing

chankubernetes

project arrangement attempt for k8s methods

cloudscalebioc

cmg_eye

CMG_EYE repo for AnVIL days demonstrations

codetools

This copy of the package is only an experiment, not intended for re-use.

conferencedigests

Support for pkgdown site that reviews information about conferences past

conkout

outlier methods with applications in cancer genomics

covidix

Statistical analysis of the COVID-19 data provided by John Hopkins Hospital

cpack

simple illustration of issue with covr with S4 methods

csama

Course material for CSAMA: Statistics and Computing in Genome Data Science

csamadist

distance, nn-graphs, clustering for CSAMA 2022

csamadrosmap

support for clustering lecture in CSAMA2016: NMF for drosophila cell fate map from expression patterns

csamaviz

background on visualization lecture for CSAMA 2014

cscapp

basis for county-level incidence

cshstats

R vignettes/pkgdown for elementary statistics for a summer course

curatedmetagenomicdata

Curated and processed metagenomic data through ExperimentHub

curatedmsidata

Data structures managing published data on microsatellite instability in cancer

curementoring

background on mentoring for YES for CURE: see https://vjcitn.github.io/CUREMentoring

d3scatter

demoami

RStudio-based project for working with bioconductor AMI

drat

Drat R Archive Template

drs4

DrS4 is a small package with some helper functions for learning about S4

dsdemo

dockstore trivial demo

ecolibsgenomeforgedemo

illustrate forgeBSgenomeDataPkg

edd

expression density diagnostics; initial code from Bioconductor 2.8, slightly modified to run in R 4.2