vjcitn Goto Github PK

gwasvcf

hca

Human Cell Atlas data discovery and retrieval

hmdbquery

utilities for querying Human Metabolome Database

hsdsrclient

R/bioconductor interface to HSDS (HDF5 object store)

htxapp

Explore human transcriptome compendium with focus on heterogeneous metadata

htxcomp

tools for manipulating human transcriptome compendium

humantranscriptomecompendium

Bioconductor infrastructure for 181000 human transcriptome studies, cloud-resident

igv4gq

interfaces to igvR for exploring GWAS and genomic QTL

igvr

An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser

igvshiny

an htmlwidget version of igv, for RStudio and Shiny apps

indexedgf

using vroom with GenomicFiles

intmmo

Software for integrative multi-modal (pkgdown at https://vjcitn.github.io/intmmo)

irangesgha

Foundation of integer range manipulation in Bioconductor

itcrpamphlets2018

Pamphlets distributed at ITCR and AACR meetings 2018

ivygapse

mirror of bioconductor package ivygapSE

ivygapseold

SummarizedExperiment for Ivy-GAP

jenk1

jenkins demo

jpnetpack

Infrastructure for gene regulatory network analysis

kitalab_demos

notebooks for use with HDF Kita Lab

kitanb

Jupyter notebooks for HDF Kita + Bioconductor

labinternal

demonstrate internal web page design using github.io/jekyll etc.

ldblock

personal image of bioconductor package on LD and variants

leebamviews

corrections to leeBamViews to permit use with Bioc 3.11, omitting GenomeGraphs usage

leiden

Implementation of the Leiden algorithm called by reticulate in R. (CRAN)

lflf

logical forests and logistic funnels

lihc450k

demonstrate HDF5 object store backed SE for LIHC 450k data

listdeps

a github action, docker-based, to list dependencies of a bioc package

locuscomparer

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

longarray

longArray Example

lsiforca43k

Use gensim with 988 abstracts for 43000 non-TCGA human transcriptomes in cancer