Wellcome Trust Sanger Institute - Human Genetics Informatics's Projects
A tool to synchronise common files between Git repositories
Service to sync GitHub and GitLab repositories
Tools for managing GitLab CI pipeline build variables
Gitlab CI runner image that pushes to a remote Git repo (Dokku, Heroku, Deis, etc.)
Proxy to provide image data from glance via HTTP, using an S3 temporary store to support Range requests
A library to easily create an authenticated web server in Go
Go bindings for RADOS, RBD, and CephFS
Golang Infoblox WAPI Library
Graph package providing various implementations of graph data structures and graph processing algorithms.
App to display the gwas manhattan and qqplots generated from hail
Scalable genomic data analysis.
Hail based analysis pipelines for HG projects
hail scripts for merging cohorts
HAPI-UR: HAPlotype Inference for UnRelated samples (cloned from: https://code.google.com/p/hapi-ur)
Control panel for HGI Users to Request work be done
Some useful scripts for use with genestack
HenPlus is a SQL shell that can handle multiple sessions in parallel. The commandline interface with the usual history functions features TAB-completion for commands, tables and columns. Database connect via JDBC.
Tools for creating and running Mercury containers. (now deprecated in favour of hgc-tools)
Set of tools for working with Mercury capsules.
Serves bamcheck files from vrpipe via http
terraform and ansible codebase to provision clusters (e.g. hail/spark) at Sanger
CookieMonster setup for HGI
HGI flavour of docker registry Dockerfile
Builds on ISG's image-creation to allow provisioning images using entire ansible playbooks remotely
HGI's prebaked Jupyter notebook stack