xinglab Goto Github PK
Name: Xinglab
Type: Organization
Bio: Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia and University of Pennsylvania
Blog: https://xinglab.org/
Name: Xinglab
Type: Organization
Bio: Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia and University of Pennsylvania
Blog: https://xinglab.org/
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
CLIP-seq Analysis of Multi-mapped reads
Deep-learning Augmented RNA-seq analysis of Transcript Splicing
GLiMMPS
Predicting splicing effects of human genome variants from sequences
IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
isoCirc
Long read to rMATS
Scripts for plotting figures and running analysis throughout the manuscript
Paired Replicate Analysis of Allelic Differential Splicing Events
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Proteotranscriptome pipeline
SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA
Stringent Quantitation of Unspliced Intron by Deep-sequencing
Survival Analysis of mRNA Isoform Variation
The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.
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