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Xinglab's Projects

abpoa icon abpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

clam icon clam

CLIP-seq Analysis of Multi-mapped reads

darts icon darts

Deep-learning Augmented RNA-seq analysis of Transcript Splicing

idarts icon idarts

Predicting splicing effects of human genome variants from sequences

iris icon iris

IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening

pairadise icon pairadise

Paired Replicate Analysis of Allelic Differential Splicing Events

pegasas icon pegasas

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

seastar icon seastar

SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA

squid icon squid

Stringent Quantitation of Unspliced Intron by Deep-sequencing

surviv icon surviv

Survival Analysis of mRNA Isoform Variation

tequila-seq icon tequila-seq

The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.

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