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abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Home Page: https://github.com/yangao07/abPOA

License: MIT License

Makefile 0.71% C 95.46% Python 3.54% CMake 0.30%
banded-dp consensus-sequence long-reads multiple-sequence-alignment partial-order-alignment simd

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dangyajun linhxxx xingyu-liao

abpoa's Issues

Are input QVs meaningful?

Hi!

Quick question: From SPOA I've learned that leveraging per-base quality values to weight nodes in the graph increases the accuracy of the generated consensus, especially using PacBio HiFi as input. Have you experimented with such feature?

Thanks,
Armin

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