Comments (4)
PeerHerholz
commented on June 19, 2024
Hi @butellyn,
thank you very much for opening this issue.
We actually started the process of supporting FreeSurfer 7 in #67 but didn't finish it. I guess it's time to do so now, wdyt @Shotgunosine?
Cheers, Peer
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noxtoby
commented on June 19, 2024
This fork over at the E-DADS github works for 7.1.1. Should be straightforward to replace line 79 of Dockerfile_fs7 with your desired version.
And if you're happy with 7.1.1, see here for using the prebuilt docker at noxtoby/edads:freesurfer7p1p1 and how to use docker2singularity for HPC cluster usage.
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PeerHerholz
commented on June 19, 2024
Thx so much for the pointer @noxtoby, that's definitely helpful.
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Remi-Gau
commented on June 19, 2024
completed in #67
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Related Issues (20)
- Docker build currently failing HOT 2
- Option to allow lower resolution T2s HOT 1
- Use Neurodocker HOT 3
- Freesurfer 7 version? HOT 14
- Parellelization HOT 10
- Introduce automated image builds HOT 14
- community standards HOT 26
- deploy failure HOT 1
- how template to fsaverage5?
- Minimal freesurfer image HOT 1
- Question about .annot file
- Possible to skip participants without aparc.stats files?
- python dependency conflicts when trying to build the latest image HOT 2
- update readme to reflect the availibility of both freesurder 6 and 7 HOT 8
- fix deploy dependencies HOT 1
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- [BUG] - docker tags are wrong in the README.md and run.py HOT 3
- Add a flag to ignore specific runs for some subjects HOT 1
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