Comments (1)
it appears there is no simple way to ignore certain runs.
Nothing standardize
The problem atm is it creates a robust template with all the runs available for a participant and won't tell unless you skim the logs.
Checking what will become the new spec for the BIDS app: it also makes no suggestions.
https://bids-standard.github.io/execution-spec/inputs.html#reserved-arguments
I would recommend the bids-filter-file approach the same way fmriprep does it.
There is a suggestion to apply it to MRIQC and I have used it in BIDSPM.
Note that bids filter file just mentions scans to include though, not to exclude.
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Related Issues (20)
- Docker build currently failing HOT 2
- Option to allow lower resolution T2s HOT 1
- Use Neurodocker HOT 3
- Freesurfer 7 version? HOT 14
- Parellelization HOT 10
- Introduce automated image builds HOT 14
- community standards HOT 26
- deploy failure HOT 1
- how template to fsaverage5?
- Minimal freesurfer image HOT 1
- Question about .annot file
- Possible to skip participants without aparc.stats files?
- Updating to current version of freesurfer HOT 4
- python dependency conflicts when trying to build the latest image HOT 2
- update readme to reflect the availibility of both freesurder 6 and 7 HOT 8
- fix deploy dependencies HOT 1
- Seems that some tests for FS7 are failing because they hit the wall time? HOT 14
- [BUG] - docker tags are wrong in the README.md and run.py HOT 3
- Adding the -notal-check flag HOT 2
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