kateto/r-network-visualization-workshop

Static and dynamic network visualization with R - code and tutorial from Sunbelt 2019 workshop.

r-network-visualization-workshop's Issues

Edge color in plot via attribute

Apparently there can be an issue with coloring the edges based on setting the edge attribute edge.color, which I think should just be color. Just so you know, perhaps simply outdated?

See on SO.

Add RCy3 to "Beyond igraph" section?

Great workshop material!

RCy3 is a Bioconductor package that exposes all the functionality of Cytoscape as R functions and seems like a good fit for your chapter 5. Beyond igraph.
https://bioconductor.org/packages/release/bioc/html/RCy3.html

We have a lot of tutorial content already (see http://cytoscape.org/cytoscape-automation/for-scripters/R/notebooks/index.html) and everything is 100% open source and free to reuse.

If you agree, should we try to craft a section and submit a PR or do you have a preferred approach to integrating new content?

vertex color based on media type can not work

colrs <- c("red", "gold")
V(net)$color <- colrs[V(net)$media.type]

I got element of V(net)$color is all NA

Is the github code updated as the downloadble file?

I saw this github here https://kateto.net/network-visualization, but the github is not updated in jun 2023.

June 14th, 2017 blog on kateto.net seems to be broken

http://kateto.net/network-visualization does not load the iframe.

I'm not sure if this is the right place to file this issue but at least I'll reach the right person.