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Intelligent Trial & Error Algorithm for Robot Adaptation
Hi, I am trying to plot the behavior performance map using the limbo library but I can't find any documentation on it. Is it due to the warning below?
command-line options for [exp/test] : -> OK
command-line options for [exp/ite_v2] : -> OK
Setting top to : /home/hankbot/Desktop/Project/limbo
Setting out to : /home/hankbot/Desktop/Project/limbo/build
Checking for 'g++' (C++ compiler) : /usr/bin/g++
Checking for 'gcc' (C compiler) : /usr/bin/gcc
Checking boost includes : 1_58
Checking boost libs : ok
Checking for Eigen : /usr/include/eigen3
Checking Intel TBB includes (optional) : /usr/include
Checking Intel TBB libs (optional) : /usr/lib/x86_64-linux-gnu
Checking Intel MKL includes (optional) : Not found
Checking for NLOpt C++ includes (optional) : /usr/local/include
Checking for NLOpt C++ libs (optional) : /usr/local/lib
Checking for libcmaes includes (optional) : Not found in ['/usr/local/include', '/usr/include']
Checking for compiler flags "-march=native" : yes
CXXFLAGS: ['-Wall', '-std=c++11', '-O3', '-g', '-march=native']
configuring for exp: ite_v2
Checking boost includes : 1_58
Checking boost libs : ok
Checking for DART includes (including utils/urdf) : ok
Checking for DART gui includes : Not found
DART: Checking for optional Bullet includes : Not found - be sure that your DART installation is without Bullet enabled
Checking for DART libs (including utils/urdf) : ok
DART: Checking for Assimp : ok
Checking for DART gui libs : Not found
Checking for hexapod_dart includes : ok
[users] To compile Limbo: ./waf build
[users] To compile and run unit tests: ./waf --tests
[users] Read the documentation (inc. tutorials) on http://www.resibots.eu/limbo
[developers] To compile the HTML documentation (this requires sphinx and the resibots theme): ./waf docs
[developers] To compile the BO benchmarks: ./waf build_bo_benchmarks
[developers] To run the BO benchmarks: ./waf run_bo_benchmarks
[developers] To compile the regression benchmarks (requires a json file with the setup): ./waf --regression_benchmarks file.json
[developers] To run the regression benchmarks: ./waf run_regression_benchmarks --regression_benchmarks file.json
[developers] To compile the extensive tests: ./waf build_extensive_tests
'configure' finished successfully (0.480s)
WARNING: simplejson not found some function may not work
YELLOW: Could not import plot_bo_benchmarks! Will not plot anything!
WARNING: simplejson not found some function may not work
build dir not created (it probably already exists, this is fine)
command-line options for [exp/test] : -> OK
command-line options for [exp/ite_v2] : -> OK
Waf: Entering directory /home/hankbot/Desktop/Project/limbo/build' Building exp: ite_v2 Waf: Leaving directory
/home/hankbot/Desktop/Project/limbo/build'
'build' finished successfully (0.617s)
Hi, I have run into a road block.
I get to the ./waf configure --exp ite_v2 --no-native
and the ./waf --exp ite_v2 --no-native
commands, I use the no native flag as otherwise I immediately run into segmentation fault.
I have pinned a *** stack smashing detected ***: <unknown> terminated
message to when global::global_robot = std::make_shared<hexapod_dart::Hexapod>(robot_file, damages);
is called in the init_simu
method.
Not too sure where to go from here.. hope you can help!
In following the Installing the DART wrapper instructions, I encountered the following issues:
Checking for DART includes (including utils/urdf) : ok
Checking for DART gui includes : Not found
DART: Checking for optional Bullet includes : ok
Checking for DART libs (including utils/urdf) : ok
DART: Checking for Assimp : ok
Checking for DART gui libs : Not found
Checking for hexapod_controller includes : ok
['-Wall', '-std=c++11', '-O3', '-march=native', '-g']
'configure' finished successfully (0.145s)
And I have referred to your suggestions on the resibots/map_elites_hexapod_v2#1.
So I am using DART v6.4 and installed freeglut3-dev.
But it still prompts "Checking for DART gui libs : Not found“
Any suggestions how to resolve this?
Hi,
I am following the installation instructions and have encountered the below when trying to run ./waf for installing the dart wrapper.
I have tried going through the installation guide a couple of times, each time encountering some issue, so I restart and attempt to purge everything. Hope you can help.
~/itev2/hexapod_simu/hexapod_dart$ ./waf
Waf: Entering directory `/home/aran/itev2/hexapod_simu/hexapod_dart/build'
[1/4] Compiling src/test.cpp
[2/4] Compiling src/test.cpp
[3/4] Linking build/test_plain
[4/4] Linking build/test
src/test.cpp.2.o: In function `void dart::common::createAspects<dart::dynamics::ShapeNode, dart::dynamics::VisualAspect, dart::dynamics::CollisionAspect, dart::dynamics::DynamicsAspect>(dart::dynamics::ShapeNode*)':
/usr/local/include/dart/common/detail/SpecializedForAspect.hpp:256: undefined reference to `dart::dynamics::detail::VisualAspectProperties::VisualAspectProperties(Eigen::Matrix<double, 4, 1, 0, 4, 1> const&, bool)'
src/test.cpp.2.o: In function `dart::dynamics::ShapeNode* dart::dynamics::BodyNode::createShapeNodeWith<dart::dynamics::VisualAspect, dart::dynamics::CollisionAspect, dart::dynamics::DynamicsAspect>(std::shared_ptr<dart::dynamics::Shape> const&)':
/usr/local/include/dart/dynamics/detail/BodyNode.hpp:168: undefined reference to `dart::dynamics::BodyNode::createShapeNode(std::shared_ptr<dart::dynamics::Shape> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
src/test.cpp.2.o: In function `hexapod_dart::HexapodDARTSimu<hexapod_dart::desc<boost::fusion::vector<hexapod_dart::descriptors::DutyCycle, hexapod_dart::descriptors::BodyOrientation> >, hexapod_dart::viz<boost::fusion::vector<hexapod_dart::visualizations::HeadingArrow, hexapod_dart::visualizations::PointingArrow<Params> > >, boost::parameter::void_, boost::parameter::void_>::_add_floor()':
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:423: undefined reference to `dart::dynamics::detail::JointProperties::JointProperties(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Eigen::Transform<double, 3, 1, 0> const&, Eigen::Transform<double, 3, 1, 0> const&, bool, dart::dynamics::detail::ActuatorType)'
src/test.cpp.2.o: In function `hexapod_dart::HexapodDARTSimu<hexapod_dart::desc<boost::fusion::vector<hexapod_dart::descriptors::DutyCycle, hexapod_dart::descriptors::BodyOrientation> >, hexapod_dart::viz<boost::fusion::vector<hexapod_dart::visualizations::HeadingArrow, hexapod_dart::visualizations::PointingArrow<Params> > >, boost::parameter::void_, boost::parameter::void_>::add_box(Eigen::Matrix<double, 6, 1, 0, 6, 1> const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, double, Eigen::Matrix<double, 4, 1, 0, 4, 1> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:310: undefined reference to `dart::dynamics::detail::JointProperties::JointProperties(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Eigen::Transform<double, 3, 1, 0> const&, Eigen::Transform<double, 3, 1, 0> const&, bool, dart::dynamics::detail::ActuatorType)'
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:308: undefined reference to `dart::dynamics::detail::JointProperties::JointProperties(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Eigen::Transform<double, 3, 1, 0> const&, Eigen::Transform<double, 3, 1, 0> const&, bool, dart::dynamics::detail::ActuatorType)'
src/test.cpp.2.o: In function `hexapod_dart::HexapodDARTSimu<hexapod_dart::desc<boost::fusion::vector<hexapod_dart::descriptors::DutyCycle, hexapod_dart::descriptors::BodyOrientation> >, hexapod_dart::viz<boost::fusion::vector<hexapod_dart::visualizations::HeadingArrow, hexapod_dart::visualizations::PointingArrow<Params> > >, boost::parameter::void_, boost::parameter::void_>::add_ellipsoid(Eigen::Matrix<double, 6, 1, 0, 6, 1> const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, double, Eigen::Matrix<double, 4, 1, 0, 4, 1> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:353: undefined reference to `dart::dynamics::detail::JointProperties::JointProperties(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Eigen::Transform<double, 3, 1, 0> const&, Eigen::Transform<double, 3, 1, 0> const&, bool, dart::dynamics::detail::ActuatorType)'
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:351: undefined reference to `dart::dynamics::detail::JointProperties::JointProperties(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Eigen::Transform<double, 3, 1, 0> const&, Eigen::Transform<double, 3, 1, 0> const&, bool, dart::dynamics::detail::ActuatorType)'
src/test.cpp.2.o: In function `dart::dynamics::ShapeNode* dart::dynamics::BodyNode::createShapeNodeWith<dart::dynamics::VisualAspect>(std::shared_ptr<dart::dynamics::Shape> const&)':
/usr/local/include/dart/dynamics/detail/BodyNode.hpp:168: undefined reference to `dart::dynamics::BodyNode::createShapeNode(std::shared_ptr<dart::dynamics::Shape> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
src/test.cpp.2.o: In function `dart::dynamics::ShapeNode* dart::dynamics::BodyNode::createShapeNodeWith<dart::dynamics::VisualAspect>(std::shared_ptr<dart::dynamics::Shape> const&)':
/usr/local/include/dart/common/detail/SpecializedForAspect.hpp:256: undefined reference to `dart::dynamics::detail::VisualAspectProperties::VisualAspectProperties(Eigen::Matrix<double, 4, 1, 0, 4, 1> const&, bool)'
collect2: error: ld returned 1 exit status
src/test.cpp.1.o: In function `void dart::common::createAspects<dart::dynamics::ShapeNode, dart::dynamics::VisualAspect, dart::dynamics::CollisionAspect, dart::dynamics::DynamicsAspect>(dart::dynamics::ShapeNode*)':
/usr/local/include/dart/common/detail/SpecializedForAspect.hpp:256: undefined reference to `dart::dynamics::detail::VisualAspectProperties::VisualAspectProperties(Eigen::Matrix<double, 4, 1, 0, 4, 1> const&, bool)'
src/test.cpp.1.o: In function `dart::dynamics::ShapeNode* dart::dynamics::BodyNode::createShapeNodeWith<dart::dynamics::VisualAspect, dart::dynamics::CollisionAspect, dart::dynamics::DynamicsAspect>(std::shared_ptr<dart::dynamics::Shape> const&)':
/usr/local/include/dart/dynamics/detail/BodyNode.hpp:168: undefined reference to `dart::dynamics::BodyNode::createShapeNode(std::shared_ptr<dart::dynamics::Shape> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
src/test.cpp.1.o: In function `hexapod_dart::HexapodDARTSimu<hexapod_dart::desc<boost::fusion::vector<hexapod_dart::descriptors::DutyCycle, hexapod_dart::descriptors::BodyOrientation> >, hexapod_dart::viz<boost::fusion::vector<hexapod_dart::visualizations::HeadingArrow, hexapod_dart::visualizations::PointingArrow<Params> > >, boost::parameter::void_, boost::parameter::void_>::_add_floor()':
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:423: undefined reference to `dart::dynamics::detail::JointProperties::JointProperties(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Eigen::Transform<double, 3, 1, 0> const&, Eigen::Transform<double, 3, 1, 0> const&, bool, dart::dynamics::detail::ActuatorType)'
src/test.cpp.1.o: In function `hexapod_dart::HexapodDARTSimu<hexapod_dart::desc<boost::fusion::vector<hexapod_dart::descriptors::DutyCycle, hexapod_dart::descriptors::BodyOrientation> >, hexapod_dart::viz<boost::fusion::vector<hexapod_dart::visualizations::HeadingArrow, hexapod_dart::visualizations::PointingArrow<Params> > >, boost::parameter::void_, boost::parameter::void_>::add_box(Eigen::Matrix<double, 6, 1, 0, 6, 1> const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, double, Eigen::Matrix<double, 4, 1, 0, 4, 1> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:310: undefined reference to `dart::dynamics::detail::JointProperties::JointProperties(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Eigen::Transform<double, 3, 1, 0> const&, Eigen::Transform<double, 3, 1, 0> const&, bool, dart::dynamics::detail::ActuatorType)'
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:308: undefined reference to `dart::dynamics::detail::JointProperties::JointProperties(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Eigen::Transform<double, 3, 1, 0> const&, Eigen::Transform<double, 3, 1, 0> const&, bool, dart::dynamics::detail::ActuatorType)'
src/test.cpp.1.o: In function `hexapod_dart::HexapodDARTSimu<hexapod_dart::desc<boost::fusion::vector<hexapod_dart::descriptors::DutyCycle, hexapod_dart::descriptors::BodyOrientation> >, hexapod_dart::viz<boost::fusion::vector<hexapod_dart::visualizations::HeadingArrow, hexapod_dart::visualizations::PointingArrow<Params> > >, boost::parameter::void_, boost::parameter::void_>::add_ellipsoid(Eigen::Matrix<double, 6, 1, 0, 6, 1> const&, Eigen::Matrix<double, 3, 1, 0, 3, 1> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, double, Eigen::Matrix<double, 4, 1, 0, 4, 1> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:353: undefined reference to `dart::dynamics::detail::JointProperties::JointProperties(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Eigen::Transform<double, 3, 1, 0> const&, Eigen::Transform<double, 3, 1, 0> const&, bool, dart::dynamics::detail::ActuatorType)'
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:351: undefined reference to `dart::dynamics::detail::JointProperties::JointProperties(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, Eigen::Transform<double, 3, 1, 0> const&, Eigen::Transform<double, 3, 1, 0> const&, bool, dart::dynamics::detail::ActuatorType)'
src/test.cpp.1.o: In function `dart::dynamics::ShapeNode* dart::dynamics::BodyNode::createShapeNodeWith<dart::dynamics::VisualAspect>(std::shared_ptr<dart::dynamics::Shape> const&)':
/usr/local/include/dart/dynamics/detail/BodyNode.hpp:168: undefined reference to `dart::dynamics::BodyNode::createShapeNode(std::shared_ptr<dart::dynamics::Shape> const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
src/test.cpp.1.o: In function `dart::dynamics::ShapeNode* dart::dynamics::BodyNode::createShapeNodeWith<dart::dynamics::VisualAspect>(std::shared_ptr<dart::dynamics::Shape> const&)':
/usr/local/include/dart/common/detail/SpecializedForAspect.hpp:256: undefined reference to `dart::dynamics::detail::VisualAspectProperties::VisualAspectProperties(Eigen::Matrix<double, 4, 1, 0, 4, 1> const&, bool)'
src/test.cpp.1.o: In function `hexapod_dart::HexapodDARTSimu<hexapod_dart::desc<boost::fusion::vector<hexapod_dart::descriptors::DutyCycle, hexapod_dart::descriptors::BodyOrientation> >, hexapod_dart::viz<boost::fusion::vector<hexapod_dart::visualizations::HeadingArrow, hexapod_dart::visualizations::PointingArrow<Params> > >, boost::parameter::void_, boost::parameter::void_>::HexapodDARTSimu(std::vector<double, std::allocator<double> > const&, std::shared_ptr<hexapod_dart::Hexapod>)':
/home/aran/itev2/hexapod_simu/hexapod_dart/include/hexapod_dart/hexapod_dart_simu.hpp:94: undefined reference to `dart::gui::osg::WorldNode::WorldNode(std::shared_ptr<dart::simulation::World>)'
collect2: error: ld returned 1 exit status
Waf: Leaving directory `/home/aran/itev2/hexapod_simu/hexapod_dart/build'
Build failed
-> task in 'test_plain' failed (exit status 1):
{task 140608166465424: cxxprogram test.cpp.2.o -> test_plain}
['/usr/bin/g++', 'src/test.cpp.2.o', '-o', '/home/aran/itev2/hexapod_simu/hexapod_dart/build/test_plain', '-Wl,-Bstatic', '-Wl,-Bdynamic', '-L/usr/lib/x86_64-linux-gnu', '-L/home/aran/resibots/lib', '-L/usr/local/lib', '-L/usr/lib', '-L/usr/lib/x86_64-linux-gnu/', '-L/usr/local/lib', '-L/usr/lib', '-L/usr/lib/x86_64-linux-gnu/', '-L/usr/local/lib', '-L/usr/lib', '-L/usr/lib/x86_64-linux-gnu', '-lboost_regex', '-lboost_system', '-lboost_filesystem', '-ldart', '-ldart-utils', '-ldart-utils-urdf', '-lassimp', '-lBulletCollision', '-lLinearMath']
-> task in 'test' failed (exit status 1):
{task 140608166465104: cxxprogram test.cpp.1.o -> test}
['/usr/bin/g++', 'src/test.cpp.1.o', '-o', '/home/aran/itev2/hexapod_simu/hexapod_dart/build/test', '-Wl,-Bstatic', '-Wl,-Bdynamic', '-L/usr/lib/x86_64-linux-gnu', '-L/home/aran/resibots/lib', '-L/usr/local/lib', '-L/usr/lib', '-L/usr/lib/x86_64-linux-gnu/', '-L/usr/local/lib', '-L/usr/lib', '-L/usr/lib/x86_64-linux-gnu/', '-L/usr/local/lib', '-L/usr/lib', '-L/usr/lib/x86_64-linux-gnu', '-lboost_regex', '-lboost_system', '-lboost_filesystem', '-ldart', '-ldart-utils', '-ldart-utils-urdf', '-lassimp', '-lBulletCollision', '-lLinearMath', '-ldart-gui', '-ldart-gui-osg', '-losg', '-losgViewer', '-losgManipulator', '-losgGA', '-losgDB']
Excuse me.
I have other issue.
When I excute "Configure the experiment: ./waf configure --exp ite_v2", I encountered the following issues:
Checking Intel MKL includes (optional) : Not found
Checking for NLOpt C++ includes (optional) : /usr/local/include
Checking for NLOpt C++ libs (optional) : Not found in ['/home/dong/resibots/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu/']
Checking for libcmaes includes (optional) : Not found in ['/usr/local/include', '/usr/include']
I would like to ask if it is necessary to install MKL and how to solve 'NLOpt C++ libs' is not found
I'm trying to install the entire project using a docker container however despite showing positive results at the Dart wrapping section, the build stopped with the error below:
This is my dockerfile
FROM ubuntu:16.04
RUN apt-get update && apt-get install -y software-properties-common sudo &&
apt-add-repository ppa:dartsim/ppa
ARG buildtime_variable=$HOME/Hexapod
ENV RESIBOTS_DIR=$buildtime_variable
ARG buildtime_variable1=$LD_LIBRARY_PATH:/lib:/usr/lib:/usr/local/lib
ENV LD_LIBRARY_PATH=$buildtime_variable1
RUN mkdir -p "$RESIBOTS_DIR"
WORKDIR $RESIBOTS_DIR
RUN sudo apt-get update && sudo apt-get install -y
build-essential cmake pkg-config git
libeigen3-dev libassimp-dev libccd-dev libfcl-dev libboost-regex-dev libboost-system-dev libode-dev
libopenscenegraph-dev
libxmu-dev libxi-dev
freeglut3-dev
RUN sudo apt-get update && sudo apt-get install -y
libtinyxml-dev libtinyxml2-dev libdart6-all-dev
liburdfdom-dev liburdfdom-headers-dev
RUN sudo apt-get update && sudo apt-get install -y
libeigen3-dev libboost-serialization-dev libboost-filesystem-dev libboost-test-dev libboost-program-options-dev libboost-thread-dev libboost-regex-dev libboost-graph-dev
libtbb-dev
WORKDIR $RESIBOTS_DIR
RUN git clone git://github.com/dartsim/dart.git
WORKDIR $RESIBOTS_DIR/dart
RUN git checkout v6.3.0
RUN mkdir build
WORKDIR $RESIBOTS_DIR/dart/build
RUN cmake -DDART_ENABLE_SIMD=OFF ..
RUN make -j4
RUN sudo make install
WORKDIR $RESIBOTS_DIR
RUN git clone https://github.com/resibots/hexapod_common.git
WORKDIR $RESIBOTS_DIR/hexapod_common/hexapod_models
RUN ./waf configure --prefix=$RESIBOTS_DIR
RUN ./waf install
WORKDIR $RESIBOTS_DIR/hexapod_common/hexapod_controller
RUN ./waf configure --prefix=$RESIBOTS_DIR &&
./waf &&\
./waf install
WORKDIR $RESIBOTS_DIR
RUN git clone https://github.com/resibots/hexapod_simu.git
WORKDIR $RESIBOTS_DIR/hexapod_simu/hexapod_dart
RUN ./waf configure --prefix=$RESIBOTS_DIR &&
./waf &&\
./waf install
WORKDIR $RESIBOTS_DIR
RUN git clone https://github.com/resibots/limbo.git
WORKDIR $RESIBOTS_DIR/limbo
RUN mkdir exp
WORKDIR $RESIBOTS_DIR/limbo/exp
RUN git clone https://github.com/resibots/ite_v2.git
WORKDIR $RESIBOTS_DIR
RUN ./waf configure --exp ite_v2 &&\
./waf --exp ite_v2
RUN ./build/exp/ite_v2/hexapod_simu path_to_archive [-l 2] [-n 5]
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