Database installation problems

[shandley]

Database installation problems

[beardymcjohnface]

Hi Patricia,
Thanks for your interest in the pipeline!
There's not much to go on here, but it looks like you have successfully downloaded some of the files in a previous run?
It looks like Snakemake had issues submitting the slurm jobs with the profile.

Do you have any slurm logs? (if you're using the example profile then they will be in logs/, otherwise they'll just be slurm-12345...log etc if using the cookiecutter profile). You might need to adjust the profile for your cluster. You should be able to access most of the information you need with sinfo -Nl and of course you clusters user guide.

[agudeloromero]

Hi Michael,

Thanks for your quick reply.

I fixed this issue changing the database path out of conda in my config file.

Cheers,

[beardymcjohnface]

Excellent news!