Comments (1)
I'm not sure what the problem is. when you run snakemake with --reason it will print an explanation for why it's running each rule. The 'missing output files' and 'input updated by another job' are the reasons why snakemake is planning on running those rules.
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Related Issues (20)
- Database installation problems HOT 4
- Enhancement: Host HOT 5
- taxonomy improvement HOT 4
- missing fields in outfile HOT 5
- Error in rule SECONDARY_AA_refactor_finalize HOT 1
- crash unknown HOT 1
- Missing new line in contigAnnotations.tsv HOT 1
- fastp not building HOT 8
- mmseqs: command not found HOT 7
- flye crash in population_assembly step HOT 2
- Illumina_NextSeq_Run dies immediately HOT 2
- Check for the presence of an environment variable for location of databases HOT 1
- readthedocs viral ecology R tutorial error fix HOT 1
- assembly Contigs in results folder HOT 1
- Enhancement: add whitelist to pre-processing HOT 2
- I want to create a web app for hecatomb. HOT 1
- HPC database installation problems HOT 31
- HPC Execution problem when changing to V.1.1.0 HOT 4
- Skip host removal HOT 1
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