Topic: biophysics Goto Github
Some thing interesting about biophysics
Some thing interesting about biophysics
biophysics,vertex model for simulating two-dimensional epithelial tissues
User: alihashmiii
biophysics,vertex model implementation to simulate biological tissue in 3D
User: alihashmiii
biophysics,Source code accompanying the paper "Diversity of immune strategies explained by adaptation to pathogen statistics"
User: andim
biophysics,Manuscript repository for our research paper, including reproducibility packages for all results, and latex source files.
Organization: barbagroup
biophysics,Modeling molecular ensembles with scalable data structures and parallel computing
Organization: bowman-lab
Home Page: https://enspara.readthedocs.io
biophysics,Oil Palm Growth and Yield Model
User: cbsteh
Home Page: http://christopherteh.com/pysawit
biophysics,Cardiac Action Potential Prediction (ApPredict) under drug-induced block of ion channels. This is a Chaste extension/bolt-on project.
Organization: chaste
Home Page: https://chaste.cs.ox.ac.uk/trac/wiki/ApPredict
biophysics,A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).
User: christophmark
biophysics,AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below site for documentation
User: ctboughter
Home Page: https://aims-doc.readthedocs.io/en/latest/
biophysics,Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
User: davidbhr
biophysics,ImageD is an image processing software designed for rapid prototyping and implementing algorithms and solutions for science, research and teaching. For more information see: https://davideilenstein.github.io/ImageD/index.html
User: davideilenstein
Home Page: https://davideilenstein.github.io/ImageD/index.html
biophysics,DeepDriveMD: Deep-Learning Driven Adaptive Molecular Simulations
Organization: deepdrivemd
biophysics,PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
Organization: drorlab
biophysics,Software for biomolecular electrostatics and solvation calculations
Organization: electrostatics
Home Page: http://www.poissonboltzmann.org/
biophysics,APBS - software for biomolecular electrostatics and solvation
Organization: electrostatics
Home Page: http://www.poissonboltzmann.org/
biophysics,APBS & PDB2PQR - software for biomolecular electrostatics and solvation
Organization: electrostatics
Home Page: http://www.poissonboltzmann.org/
biophysics,Yet another version of PDBx/mmCIF Python implementation
Organization: electrostatics
biophysics,PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
Organization: electrostatics
Home Page: http://www.poissonboltzmann.org/
biophysics,Virtual reality for biomolecular electrostatics
Organization: electrostatics
biophysics,Online calculator that simulates DNA physical response to force, torque, protein energy, and DNA-inserts
User: feynmandna
Home Page: http://137.132.69.48:7717/
biophysics,a Living ENsemble Simulator -- a lens to help you watch biophysics
Organization: flatironinstitute
biophysics,A Python platform for Structural Bioinformatics
User: graik
Home Page: http://biskit.pasteur.fr
biophysics,genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
User: hussainather
biophysics,A CTF Simulation Web App
Organization: jianglab
Home Page: https://jiang.bio.purdue.edu/ctfsimulation
biophysics,Collection of Python scripts to setup and run simulations with OpenMM
User: joaorodrigues
biophysics,KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.
Organization: kamerlinlab
Home Page: https://kamerlinlab.github.io/KIF/
biophysics,Software for the prediction of DEER and PRE data from conformational ensembles.
Organization: kull-centre
biophysics,Python package to extract quasi-rigid domains in protein shells and other macromolecular complexes.
Organization: luquelab
Home Page: https://luquelab.github.io/pyCapsid/
biophysics,EP-PINNs implementation for 1D and 2D forward and inverse solvers for the Aliev-Panfilov cardiac electrophysiology model. Also includes Matlab finite-differences solver for data generation.
User: martavarela
biophysics,Analysis of non-covalent interactions in MD trajectories
User: maxscheurer
Home Page: https://pycontact.github.io/
biophysics,Robust and stable clustering of molecular dynamics simulation trajectories.
Organization: moldyn
Home Page: http://moldyn.github.io/Clustering/
biophysics,VMD scripts
User: naotohori
biophysics,System Dynamics script utilities
User: nico-curti
Home Page: https://nico-curti.github.io/SysDyn
biophysics,Energy minimization software for DNA/proteins complexes by the Olson lab at Rutgers
User: nicocvn
Home Page: https://nicocvn.github.io/emDNA/
biophysics,The Open Free Energy toolkit
Organization: openfreeenergy
Home Page: https://docs.openfree.energy
biophysics,Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by amide-amide interactions of the backbone
User: osita-sunday-nnyigide
biophysics,Python code to fit single-angle dynamic light scattering data using the Tikhonov Philips regularisation
User: osvalb
biophysics,Repository for Pachter Lab Biophysics
Organization: pachterlab
Home Page: https://biophysics.readthedocs.io/en/latest/
biophysics,Robust simulation software for the comprehensive evaluation of protein electrostatics in unfolded state.
Organization: peptoneltd
Home Page: https://peptone.io
biophysics,A python library for advanced lattice light-sheet image analysis
Organization: pylattice
Home Page: http://www.schoeneberglab.org
biophysics,DeepDriveMD implemented with Colmena
Organization: ramanathanlab
biophysics,python library for numerical focusing (refocusing, autofocusing) of complex wave fields
Organization: ri-imaging
Home Page: https://nrefocus.readthedocs.io
biophysics,Python library for diffraction tomography with the Born and Rytov approximations
Organization: ri-imaging
Home Page: https://odtbrain.readthedocs.io
biophysics,Using VMD and NAMD for molecular dynamics simulation of protein PDB files.
User: sarah-hesham-2022
biophysics,A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy
User: simonguld
biophysics,Computational Biophysics for Medicine in 3D Slicer
Organization: slicercbm
Home Page: https://slicercbm.org
biophysics,Python package to infer tensions from 2D microscopy images of embryos and tissues
User: virtualembryo
Home Page: https://www.biorxiv.org/content/10.1101/2023.03.07.531437v1
biophysics,a package of Python modules and example scripts for experimenting with the two-dimensional HP lattice model of Dill and Chan.
User: vvoelz
biophysics,a package to simulate biomembranes at mesoscale
User: weria-pezeshkian
biophysics,Prediction spatio-temporal dynamics using Reservoir Computing
User: zimmerrol
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