Topic: cwl-workflow Goto Github
Some thing interesting about cwl-workflow
Some thing interesting about cwl-workflow
cwl-workflow, Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Organization: 4dn-dcic
cwl-workflow,Workflow for GA4GH/DREAM challenge (phase 2)
Organization: barski-lab
Home Page: https://barski-lab.github.io/ga4gh_challenge/
cwl-workflow, CWL that generates a mock STAC item. Can be useful for testing the zoo-project-dru software.
User: bbrauzzi
cwl-workflow,A CWL implementation of a modular GATK Variant Calling pipeline
Organization: cbsb
cwl-workflow,CWL examples using GDAL
Organization: cwl-for-eo
cwl-workflow,CWL examples with the OrfeoToolbox
Organization: cwl-for-eo
cwl-workflow,CWL on Kubernetes
Organization: duke-gcb
Home Page: https://duke-gcb.github.io/calrissian/
cwl-workflow,This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Organization: ebi-metagenomics
Home Page: https://www.ebi.ac.uk/metagenomics/
cwl-workflow,This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts
Organization: ebi-metagenomics
Home Page: https://www.elixir-europe.org/
cwl-workflow,CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid modification, sumoylation, etc).
User: eliza-m
cwl-workflow,Infrastructure as a code for reproducible data science pipelines using CWL and Airflow
Organization: foromeplatform
Home Page: https://github.com/NSAPH-Data-Platform
cwl-workflow,PLANTOGEN-A, an automated genome assembly pipeline designed to assemble symbiont microorganisms genome from Oxford Nanopore (ONT) data.
User: giulia-calia
cwl-workflow,Prototype implementation of LivePaper with GIS indices as the subject.
User: gusellerm
cwl-workflow,
Organization: icgc-tcga-pancancer
cwl-workflow,The CWL workflow to execute the OxoG filter.
Organization: icgc-tcga-pancancer
cwl-workflow,This workflow performs annotation on SNV and INDEL VCFs.
Organization: icgc-tcga-pancancer
cwl-workflow,Generation Quality Controls Files for MSK-ACCESS
Organization: msk-access
Home Page: https://cmo-ci.gitbook.io/access-quality-control-v2/
cwl-workflow,Workflow for collapsing of standard binary alignment mapping file generated by MSK-ACCESS
Organization: msk-access
Home Page: https://msk-access.gitbook.io/bam-collapsing
cwl-workflow,A list of subworkflows used for MSK-ACCESS data processing.
Organization: msk-access
Home Page: https://msk-access.gitbook.io/cwl-subworkflows/
cwl-workflow,Workflow for making MSK-ACCESS standard binary alignment mapping file.
Organization: msk-access
Home Page: https://msk-access.gitbook.io/uncollapsed-bam-generation
cwl-workflow,Gerber: Generalized Easy Reproducible Bioinformatics Environment wRapper
Organization: ncbi-hackathons
Home Page: https://ncbi-hackathons.github.io/ContainerInception/
cwl-workflow,A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
Organization: ncbi
cwl-workflow,Project Manager for NGS data analysis
Organization: ncbi
cwl-workflow,Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
User: otiai10
Home Page: https://hotsub.github.io/
cwl-workflow,CReSCENT Portal: https://crescent.cloud | CReSCENT Docs: https://pughlab.github.io/crescent-frontend/
Organization: pughlab
cwl-workflow,Python project example for Sentinel-1 calibration using CWL for the build/test development phase
Organization: snap-contrib
cwl-workflow,Request for Comments (RFCs) on the St. Jude Cloud Project.
Organization: stjudecloud
Home Page: https://stjudecloud.github.io/rfcs/
cwl-workflow,Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Organization: stjudecloud
cwl-workflow,Growth Rate Index Calculater wrapped by CWL
User: suzuki-shm
cwl-workflow,Wrapper tool of RaGOO by CWL and Docker
User: suzuki-shm
cwl-workflow,OGC EO Application Package Hands-on
Organization: terradue
Home Page: https://terradue.github.io/ogc-eo-application-package-hands-on
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