Topic: genome-scale-models Goto Github
Some thing interesting about genome-scale-models
Some thing interesting about genome-scale-models
genome-scale-models,IgemRNA is an open access toolbox for transcriptome data statistical and biochemical network topology-based analysis. IgemRNA was developed in the MATLAB environment in order to take advantage of the up-to-date and most commonly distributed GSM modelling tool Cobra Toolbox 3.0 and spreadsheet file capabilities.
User: bigdatainsilicobiologygroup
genome-scale-models,Trim, extract, and convert GEMs
User: binfalse
Home Page: https://gemtractor.bio.informatik.uni-rostock.de
genome-scale-models, DeltaFBA is a set of MATLAB functions that employs constraint-based modeling, in combination with differential gene expression data, to evaluate changes in the intracellular flux distribution between two conditions.
Organization: cabsel
genome-scale-models,Learn metabolic modelling and using ScrumPy for modelling.
User: caileancarter
genome-scale-models,Supplementary data for co-occurrence manuscript
User: cdanielmachado
genome-scale-models,Designing microbial communities
User: cdanielmachado
genome-scale-models,EMBL GEMs: A collection of GEnome-scale Models for bacterial species
User: cdanielmachado
genome-scale-models,SMETANA: a tool to analyse interactions in microbial communities
User: cdanielmachado
genome-scale-models,Genome-scale metabolic model of Methylococcus capsulatus.
User: christianlieven
genome-scale-models,Methanoperedens nitroreducens genome-scale metabolic model.
Organization: computer-aided-biotech
Home Page: https://computer-aided-biotech.github.io/iMN22HE/
genome-scale-models,Collection of scripts to collect data from databases such as BRENDA, BiGG, and the chemical translation service, and update a model of CHO-K1 growth.
User: dcoukos
genome-scale-models,COM-dFBA is a MATLAB based COMmunity Dynamic Flux Balance Analysis framework developed by the Chalmers iGEM 2018 team. For this work, we were nominated for best modeling at the Giant Jamboree.
User: franciscozorrilla
Home Page: http://2018.igem.org/Team:Chalmers-Gothenburg/ModelConstruction
genome-scale-models, iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
Organization: gulermalaria
genome-scale-models,Genome scale metabolic model for Ogataea polymorpha NCYC495.
Organization: iamb-rwth-aachen
genome-scale-models,Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
User: jclachance
genome-scale-models,H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
User: kishwarshafin
genome-scale-models,mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models
Organization: lobolab
Home Page: https://lobolab.umbc.edu/mergem/
genome-scale-models,Genome scale metabolic models in SBML format
User: m-jahn
genome-scale-models,TRIMER is a package for building integrated metabolic–regulatory models base on Bayesian network. TRIMER can be used for knockout phenotype prediction and knock flux prediction.
User: niupuhua1234
genome-scale-models,COMMIT: Community-dependent gap-filling considering metabolite leakage
User: pwendering
genome-scale-models,Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.
Organization: sriram-lab
Home Page: https://cancerandmetabolism.biomedcentral.com/articles/10.1186/s40170-020-0211-1
genome-scale-models,58 GEMs for gut bacterial species from microbiota of healthy and malnourished children.
Organization: sysbiochalmers
genome-scale-models,Integration of cofactors with proteome-constrained model of Saccharomyces cerevisiae
Organization: sysbiochalmers
genome-scale-models,A container for all enzyme constrained models created by GECKO.
Organization: sysbiochalmers
genome-scale-models,Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.
Organization: sysbiochalmers
genome-scale-models,The generic genome-scale metabolic model of Homo sapiens
Organization: sysbiochalmers
Home Page: https://sysbiochalmers.github.io/Human-GEM-guide/
genome-scale-models,The consensus GEM for Kluyveromyces marxianus
Organization: sysbiochalmers
Home Page: https://github.com/SysBioChalmers/Kluyveromyces_marxianus-GEM
genome-scale-models,Supplementary code and results from doi:10.1101/2020.02.20.957662
Organization: sysbiochalmers
Home Page: https://www.biorxiv.org/content/10.1101/2020.02.20.957662v1
genome-scale-models,
Organization: sysbiochalmers
genome-scale-models,Proteome-constrained model of Lactococcus lactis
Organization: sysbiochalmers
Home Page: https://doi.org/10.15252/msb.202010093
genome-scale-models,
Organization: sysbiochalmers
genome-scale-models,The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
Organization: sysbiochalmers
Home Page: http://sysbiochalmers.github.io/RAVEN/
genome-scale-models,Genome-scale metabolic model of Rhodotorula toruloides
Organization: sysbiochalmers
genome-scale-models,Genome-scale model of Streptomyces coelicolor.
Organization: sysbiochalmers
genome-scale-models,Genome-scale model of Yarrowia lipolytica.
Organization: sysbiochalmers
Home Page: http://www.nature.com/articles/npjsba20165
genome-scale-models,The consensus GEM for Saccharomyces cerevisiae
Organization: sysbiochalmers
Home Page: http://sysbiochalmers.github.io/yeast-GEM/
genome-scale-models,Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3
Organization: sysbioinra
Home Page: https://sysbioinra.github.io/rbatools/
genome-scale-models,Genome-scale metabolic model of Cordyceps militaris
Organization: sysbiomics
Home Page: https://doi.org/10.1016/j.csbj.2019.11.003
genome-scale-models,CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool
Organization: systemsbioinformatics
Home Page: https://systemsbioinformatics.github.io/cbmpy-metadraft/
genome-scale-models,GEM for the microalga Microchloropsis gaditana.
Organization: total-rd
genome-scale-models,Genome-scale model of Bacillus coagulans
User: yu-sysbio
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