Topic: microbiology Goto Github
Some thing interesting about microbiology
Some thing interesting about microbiology
microbiology,Collection of scripts for bacterial genomics
User: aleimba
microbiology,The Pseudobatch transformation is a method to easy analysis of measurement from a fed-batch fermentation process. After transformation, the data can be analysed as if it was obtained from a batch fermentation process. The Pseudobatch transformation is especially useful for fed-batch processes where samples where drawn from the bioreactor.
Organization: biosustain
Home Page: https://biosustain.github.io/pseudobatch/
microbiology,PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
Organization: bu-isciii
Home Page: https://github.com/BU-ISCIII/plasmidID/wiki
microbiology,A Microbial Ontology of Phenotypic and Metabolic Characters, Assays, and Culture Media Found in Prokaryotic Taxonomic Descriptions
User: carrineblank
microbiology,A MALDI Mass Spectrometry Bioinformatics Platform
User: chasemc
Home Page: https://chasemc.github.io/IDBac
microbiology,Microbiome Amplicon Analysis and Visualization
User: danielsprockett
microbiology,scripts and notes for learning
User: dmnfarrell
microbiology,PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
User: dr-joe-wirth
microbiology,Code to go with the https://doi.org/10.1101/271569 publication. Downloads html pages from culture-collection centers and mines these for growth temperature data.
Organization: engqvistlab
microbiology,A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
Organization: engqvistlab
microbiology,hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
User: ewissel
microbiology,MGKit: Metagenomics Framework
User: frubino
microbiology,A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
Organization: genotoul-bioinfo
Home Page: https://binette.readthedocs.io
microbiology,Metagenomic pipeline and other general scripts used in the lab.
Organization: geo-omics
Home Page: https://sites.lsa.umich.edu/geomicro/
microbiology,A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
User: jlumpe
microbiology,SPIRO is a Smart Plate Imaging Robot
User: jonasoh
Home Page: https://www.alyonaminina.org/spiro
microbiology,creating hybrid-gene phylogenetic trees for diversity analyses
User: jtfouquier
microbiology,
Organization: knowledge-graph-hub
Home Page: https://knowledge-graph-hub.github.io/kg-microbe/index.html
microbiology,
Organization: labgem
microbiology,Build a partitioned pangenome graph from microbial genomes
Organization: labgem
Home Page: https://ppanggolin.readthedocs.io
microbiology,Genome scale metabolic models in SBML format
User: m-jahn
microbiology,A list of useful resources in the microbial colony classification and detection, such as datasets, papers, links to projects
User: majsylw
microbiology,Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
Organization: metagenlab
microbiology,Simple counting of bacterial colonies from pictures of plates.
User: microbialman
microbiology,microbiome R package
Organization: microbiome
microbiology,Bioinformatics: scripts and tools in use at the Microbiology and Infection Unit at the University of Warwick - and a place to seek out help!
Organization: microinfect
microbiology,Microbiology 1K QA pairs in Burmese Language
User: minsithu
microbiology,Python implementation of barrnap (Bacterial ribosomal RNA predictor)
User: moshi4
microbiology,A genome visualization python package for comparative genomics
User: moshi4
Home Page: https://moshi4.github.io/pyGenomeViz
microbiology,Rapid comparison and dereplication of genomes
User: mrolm
microbiology,Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
User: msberends
Home Page: https://msberends.github.io/AMR/
microbiology,Accelerate common Petri dish assays with AI.
User: mshamash
Home Page: https://onepetri.ai
microbiology,Repository containing trained YOLOv5 object detection models used within OnePetri for Petri dish and plaque detection.
User: mshamash
Home Page: https://onepetri.ai
microbiology,a platform for the collection, storage, retrieval, and analysis of experimental data for laboratory workflows
Organization: mullinslab
microbiology,Bacterial whole genome sequencing (WGS) analysis
User: nadjakry
microbiology,Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
User: oschwengers
Home Page: https://doi.org/10.1099/mgen.0.000398
microbiology,Rapid determination of appropriate reference genomes.
User: oschwengers
Home Page: https://doi.org/10.21105/joss.01994
microbiology,An easy-to-use C++ application to count bacterial colonies (i.e. CFU).
User: qgeissmann
Home Page: http://opencfu.sourceforge.net
microbiology,Collection of commonly used RDP Tools for easy building
Organization: rdpstaff
microbiology,Bacterial video tracking & analysis
User: schwanbeck
microbiology,SCORE - a consensus tool for detecting differentially expressed genes in bacteria
User: siwolf
microbiology,R package to perform data pre-processing for more informative bacterial GWAS
Organization: snitkin-lab-umich
microbiology,📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
User: telatin
microbiology,Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.
Organization: tibhannover
Home Page: https://TIBHannover.GitHub.io/BacDiveR/
microbiology,The scripts contained in this repository relate directly to the work conducted by the Tree Root Microbiome Project (TRMP) led by Dr Steve Wakelin.
User: tomc-93
microbiology,GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
Organization: usda-ars-gbru
Home Page: https://guidemaker.org
microbiology,A comprehensive and customizable R package for microbiome analysis.
Organization: vallenderlab
Home Page: https://vallenderlab.github.io/MicrobiomeR/
microbiology,A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
User: vinuesa
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.