Topic: networks-biology Goto Github
Some thing interesting about networks-biology
Some thing interesting about networks-biology
networks-biology,Tools for Generating, Visualising, and Analysing Link Communities in Networks
User: alextkalinka
Home Page: https://alextkalinka.github.io/linkcomm
networks-biology,Connecting nodes
User: arnaudporet
networks-biology,Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
User: arnaudporet
networks-biology,Streaming over networks
User: arnaudporet
networks-biology,A (soon to be) lightweight Python package for accessing single-cell connectome networks with metadata.
User: bdpedigo
Home Page: http://docs.neurodata.io/neuropull/
networks-biology,An environment for curating, validating, and exploring knowledge assemblies encoded in BEL
Organization: bel-commons
networks-biology,Conversion of BEL to Agent Based Models
Organization: bel2abm
networks-biology,Generate dynamic structural causal models from biological knowledge graphs encoded in the Biological Expression Language (BEL)
Organization: bel2scm
networks-biology,LaTeX source for "Bio2BEL: Integration of Structured Knowledge with Biological Expression Language"
Organization: bio2bel
Home Page: https://doi.org/10.1101/631812
networks-biology,A Bio2BEL package for converting BMKS-react to BEL
Organization: bio2bel
networks-biology,A Bio2BEL package for DrugBank (https://www.drugbank.ca)
Organization: bio2bel
Home Page: http://bio2bel-drugbank.rtfd.io
networks-biology,A Bio2BEL package for converting Entrez and HomoloGene to BEL
Organization: bio2bel
Home Page: https://bio2bel-entrez.rtfd.io
networks-biology,A Bio2BEL package for converting ExPASy to BEL
Organization: bio2bel
networks-biology,A Bio2BEL package for the terminology from FlyBase (http://flybase.org/)
Organization: bio2bel
networks-biology,A Bio2BEL package for converting the Gene Ontology (GO) to BEL
Organization: bio2bel
networks-biology,A Bio2BEL package for converting the Human Metabolite Database (HMDB) to BEL
Organization: bio2bel
Home Page: http://bio2bel-hmdb.rtfd.io/
networks-biology,A Bio2BEL package for converting InterPro to BEL
Organization: bio2bel
networks-biology,A Bio2BEL package for integrating pathway-related information from KEGG in BEL
Organization: bio2bel
Home Page: http://bio2bel-kegg.rtfd.io
networks-biology,Integration of pathway-related information from Reactome in BEL
Organization: bio2bel
Home Page: http://bio2bel-reactome.rtfd.io
networks-biology,COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
Organization: covid19kg
networks-biology,📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
User: cthoyt
Home Page: https://github.com/cthoyt/doctoral-thesis/raw/master/main.pdf
networks-biology, A machine learning tool to assign edges in protein-protein interaction networks with a function.
User: daniaki
networks-biology,A Python package for drug discovery by analyzing causal paths on multiscale networks
Organization: drug2ways
Home Page: https://drug2ways.readthedocs.io/en/latest/
networks-biology,Simulating and analyzing dynamical network models
Organization: elife-asu
Home Page: https://neet.readthedocs.io/en/stable
networks-biology,Modeling heme pathogenicity and pathway dysregulation in the context of hemolytic disorders
Organization: hemekg
Home Page: https://hemekg.github.io/hemekg/
networks-biology,Bio-ModelChecker: Using Bounded Constraint Satisfaction to Seamlessly Integrate Observed Behavior with Prior Knowledge of Biological Networks
User: hooman650
networks-biology,A repository of the python code created for my undergraduate research project.
User: jwr42
networks-biology,Codes and examples that are explored in the paper "Optimal strategy for determining flow-rates of ecosystem2models (at steady-state)." To be submitted Fall 2018
User: kellyblack
networks-biology,A workflow for gaining statistical insight via differential network analysis of microarray data
User: lericnet
networks-biology,Determine an optimal modularity resolution for executing MolTI-DREAM, a community definition software for multilayer networks.
User: marbatlle
networks-biology,Supplementary data 1 of the paper Mello et al. 2019 (NatureEcoEvo).
User: marmello77
networks-biology,
User: menicgiulia
networks-biology,Functional Associations using Variational Autoencoders
User: mikelkou
networks-biology,A Shiny Application for Visualization and Analysis of Networks
Organization: montilab
networks-biology,Contextualization of protein-protein interaction databases by cell line
Organization: montilab
Home Page: https://montilab.github.io/ppi-context
networks-biology,Structure Learning for Hierarchical Networks
Organization: montilab
Home Page: https://montilab.github.io/shine/
networks-biology,A series of simulation codes used to emulate quantum-like networks in the simulation of emergent adaptive behavior, such as network synchronization, and relate the nature of the coupled harmonic oscillators with non-local behavior and chimera states in systems of quantum particles. Coding Used is based on mathematical modelling of transport in quantum many-body systems and networks made tractable using the quantum newtons cradle. A full showcase of this project is discussed in the following videos:https://www.youtube.com/watch?time_continue=115&v=WX3Ds_xCOaE
User: muonray
networks-biology,Codebase for discovery of latent dynamic connectivity in brain cortical networks
User: neurotechnologies
Home Page: https://www.biorxiv.org/content/10.1101/2023.08.08.552512v1
networks-biology,A web application for visualizing and exploring pathway knowledge in Biological Expression Language (BEL)
Organization: pathwaymerger
Home Page: https://pathme.scai.fraunhofer.de/
networks-biology,`ggbipart`, an R package for plotting bipartite networks
User: pedroj
networks-biology,A multi-reference network annotation tool to support omics analysis
User: pedromtq
networks-biology,Curation of Neurodegeneration in Biological Expression Language (CONIB)
Organization: pharmacome
Home Page: https://pharmacome.github.io/conib
networks-biology,🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
Organization: pybel
Home Page: http://pybel.readthedocs.io
networks-biology,A PyBEL extension for interconversion with CX
Organization: pybel
Home Page: http://pybel-cx.rtfd.io
networks-biology,Discovering sustainability in ecosystems
Organization: robhoox
Home Page: https://RobhooX.github.io/Robhoot/
networks-biology,models and main code to reproduce the results of the research articule "single molecule switches and oscillators"
User: rosherbal
Home Page: https://github.com/rosherbal/sw2os
networks-biology,Dynamical analysis of minimnal networks based on approximate majority algorithm (AM)
User: rosherbal
Home Page: https://github.com/rosherbal/thesis
networks-biology,Collection of Python functions to run network-based analysis in signed and directed networks.
Organization: saezlab
Home Page: https://github.com/rosherbal/network_tools
networks-biology,R client for the OmniPath web service
Organization: saezlab
Home Page: https://r.omnipathdb.org/
networks-biology,Spicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data
User: yollct
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