Topic: transcriptome-assembly Goto Github
Some thing interesting about transcriptome-assembly
Some thing interesting about transcriptome-assembly
transcriptome-assembly,Quality assessment of de novo transcriptome assemblies from RNA-Seq data
Organization: ablab
Home Page: http://cab.spbu.ru/software/rnaquast
transcriptome-assembly,SPAdes Genome Assembler
Organization: ablab
Home Page: http://ablab.github.io/spades/
transcriptome-assembly,Finding putative exons and constructing splicegraphs using Trans-ABySS contigs
Organization: bcgsc
Home Page: http://www.bcgsc.ca/platform/bioinfo/software/chopstitch
transcriptome-assembly,de novo assembly of RNA-seq data using ABySS
Organization: bcgsc
transcriptome-assembly,Most up-to-date scripts used in the Palumbi lab
User: bethsheets
transcriptome-assembly,Biocore's de novo transcriptome assembly workflow based on Nextflow
Organization: biocorecrg
transcriptome-assembly,A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
User: cfarkas
transcriptome-assembly, QuantEval is an analysis pipeline which evaluate the reliability of quantification tools.
User: dn070017
transcriptome-assembly,ease of access gff files from tair for reading tair ids.
User: gauravcodepro
transcriptome-assembly,transdecoder predictions analyzer for pygenomeviz, mauve.
User: gauravcodepro
transcriptome-assembly,from trinity assembly to deep learning.
User: gauravcodepro
transcriptome-assembly,an investigation into the efficiency of Trinity transcriptome assemblies
User: holsapple
transcriptome-assembly,Bioinformatics Programming - Transcriptome Assembly
User: indronil-prince
transcriptome-assembly,Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.
User: jazminvaleriano
transcriptome-assembly,A Snakemake pipeline for Illumina Transcriptome Assembly: trimmomatic + dignorm+ trinity
User: jlanga
transcriptome-assembly,Transcriptome assembly via digital normalization with khmer and Trinity
User: jlanga
transcriptome-assembly,The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: ab initio, with extrinsic hints, or by training a new species.
User: juliawiggeshoff
transcriptome-assembly,Snakemake workflow to de novo assemble transcriptomes with two software, Trinity and Shannon. Imported from my GitLab.
User: juliawiggeshoff
Home Page: https://gitlab.leibniz-lib.de/jwiggeshoff/rna-seq-to-busco
transcriptome-assembly,Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining
User: jungsoh
transcriptome-assembly,Scripts and notes related to the manuscript: Stuart KC & Edwards RJ et al. 2022. Transcript- and annotation-guided genome assembly of the European starling. Molecular Ecology Resources, doi.org/10.1101/2021.04.07.438753. † joint first author
User: katarinastuart
transcriptome-assembly,A collection of scripts for our PacBio paper
User: lilabzhaohua
transcriptome-assembly,Official Repository of the Oyster River Protocol for Transcriptome Assembly
Organization: macmanes-lab
transcriptome-assembly,These are tutorials on a subset of tools available for processing raw RNAseq data. This if for HISAT2_SAMtools_Stringtie_gffcompare_ballgown pipeline or HISAT2_SAMtools_Stringtie_PrepDEanalysis.py_DESeq2 pipeline
User: mppl1
transcriptome-assembly,A pipeline for the assembly of VAR genes from transcriptome data
Organization: papenfusslab
transcriptome-assembly,Supplementay Material for publication "Species-specific molecular responses of wild coral reef fishes during a marine heatwave"
User: roblehmann
Home Page: https://doi.org/10.1126/sciadv.aay3423
transcriptome-assembly,Assembler for multiple RNA-seq samples
Organization: shao-group
transcriptome-assembly,MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing
User: shinichinamba
Home Page: https://musta.readthedocs.io
transcriptome-assembly,To perform RNA-Seq data analysis and calculate length-scaled transcripts per million (TPM) values using the Salmon tool and the GenomicFeatures package in R.
User: sivkri
transcriptome-assembly,A collection of scripts for our PacBio paper
User: sunyumail93
Home Page: https://www.biorxiv.org/content/10.1101/2020.05.28.122382v1
transcriptome-assembly,tool for long read transcriptome assembly
Organization: tf-chan-lab
transcriptome-assembly,a_inornata research project
User: tfording
Home Page: https://tfording.github.io/asp_inornata/
transcriptome-assembly,Cleavage site prediction via de novo assembly
User: zyxue
transcriptome-assembly,Visualize read-to-contig alignment during assembly analysis
User: zyxue
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