Topic: functional-annotation Goto Github
Some thing interesting about functional-annotation
Some thing interesting about functional-annotation
functional-annotation,TAIFA is a workflow for conducting Whole-Genome Sequencing (WGS) of bacteria
User: alexjisa
functional-annotation,R/Bioconductor package for optimized functional annotation of ChIP-seq data
User: bohdan-khomtchouk
functional-annotation,Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
User: brettwhitty
functional-annotation,Tool for integrative gene-based association analysis using GWAS summary stats
User: corbinq
functional-annotation,A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
Organization: dalmolingroup
Home Page: https://dalmolingroup.github.io/euryale/
functional-annotation,
Organization: dill-picl
functional-annotation,GOMAP-Singularity is the containerized version of GOMAP
Organization: dill-picl
Home Page: http://gomap.blunderingbioinformatics.org/
functional-annotation,Fast genome-wide functional annotation through orthology assignment
Organization: eggnogdb
Home Page: http://eggnog-mapper.embl.de
functional-annotation,Nextcast: a software suite to analyse and model toxicogenomics data
Organization: fhaive
functional-annotation,factR: Functional Annotation of Custom-assembled Transcripts in R
User: fursham-h
Home Page: https://fursham-h.github.io/factR/
functional-annotation,AmiGO is the public interface for the Gene Ontology.
Organization: geneontology
Home Page: http://amigo.geneontology.org
functional-annotation,GitHub repository for the NodeJS/Express REST web service go-api-sparql. Used for the front-end www.geneontology.org/gocam.
Organization: geneontology
Home Page: https://app.swaggerhub.com/apis-docs/geneontology/gosparql/2.2
functional-annotation,Perform annotation deepening and satisfiability checking for GO annotations in GAFs
Organization: geneontology
functional-annotation,This repository hosts the tracker for issues pertaining to GO annotations.
Organization: geneontology
functional-annotation,Source ontology files for the Gene Ontology
Organization: geneontology
Home Page: http://geneontology.org/page/download-ontology
functional-annotation,The Gene Ontology Helpdesk
Organization: geneontology
Home Page: http://help.geneontology.org
functional-annotation,A repository for the development of patterns and terms for axiomatisation and refactoring of the GO MF branch
Organization: geneontology
functional-annotation,Graph-based modeling environment for biology, including prototype editor and services
Organization: geneontology
Home Page: http://noctua.geneontology.org/
functional-annotation,This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.
Organization: geneontology
functional-annotation,(DEPRECATED) Short form matrix view of all GO annotations for a given gene
Organization: geneontology
functional-annotation,for keeping the PAINT GAF files up to date
Organization: geneontology
functional-annotation,A tool for domain based annotation with databases from the Conserved Domains Database
User: iquasere
functional-annotation,UniProt Id Mapping through API
User: iquasere
functional-annotation,Material used for a bioinformatics computer lab course, covering DNA/RNA sequence assembly and analysis, phylogenetic analysis, gene functional annotation, and metagenomic analysis
User: jungsoh
functional-annotation,Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining
User: jungsoh
functional-annotation,A multi-way annotator for genetic elements and genetic variations
Organization: kchen-lab
functional-annotation,An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP
Organization: li-lab-genetics
functional-annotation,An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
Organization: li-lab-genetics
functional-annotation,An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
Organization: li-lab-genetics
functional-annotation,An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
Organization: li-lab-genetics
functional-annotation,Software for monitoring metagenomes using nanopore sequencing reads
User: lucast122
functional-annotation,Snakemake pipeline to benchmark 11 functional pathway annotation systems
Organization: meringlab
functional-annotation,ATLAS - Three commands to start analyzing your metagenome data
Organization: metagenome-atlas
Home Page: https://metagenome-atlas.github.io/
functional-annotation,Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.
Organization: metagenopolis
functional-annotation,A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
User: moshi4
functional-annotation,Python3 extension for DAVID Bioinformatics Tool
User: narek01
functional-annotation,A pipeline to go from raw sequencing data to high quality bins and pretty plots.
Organization: parfreylab
functional-annotation,A back-end functional annotation database for the hg19 reference genome inspired by the FAVOR project.
User: patrickhallaert
functional-annotation,ncRNA identification, annotation and functional prediction
User: pentalpha
functional-annotation,Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly, 2-gene prediction, 3-functional annotation, 4-comparative genomics and 5-production of a predictive webserver.
User: rbr7
functional-annotation,Analysis workflow to generate fungal assemblies, generate gene structural and functional annotations
User: sagnikbanerjee15
functional-annotation,Human gene annotations for the oncology domain
User: sigven
Home Page: https://sigven.github.io/geneOncoX/
functional-annotation,Multi-dimensional Annotation Class Integrative Estimation
User: xihaoli
functional-annotation,An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
User: xihaoli
functional-annotation,An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
User: xihaoli
functional-annotation,An R package for performing STAAR procedure in whole-genome sequencing studies
User: xihaoli
functional-annotation,An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
User: xihaoli
functional-annotation,The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
User: xihaoli
functional-annotation,An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
User: xihaoli
functional-annotation,A computational tools for improving the functional annotation of bacterial genomes and the classification of CDSs into cllusters of orthologous groups (COGs). It allows summarizing annotations from different resources to provide a more accurate annotation of genes regarding their assignment into COGs and their categories.
User: xpolak37
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