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License: MIT License
is_gtf
argument in metagenome_to_gff
is not effective
If I read code correctly, for MetaGenome, the export
method will return the gff_handle_ref
shock file directly and ignore the is_gtf
argument.
https://github.com/kbaseapps/GenomeFileUtil/blob/master/lib/GenomeFileUtil/core/GenomeToGFF.py#L66
Large metagenomes are taking as much as a day to upload.
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In many places token is not passed (it's expected to be in some system env-variable)
For instance it happens here:
And another example is here (there is workspace client creation inside assembly script, and again without token):
here:
and here:
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