Topic: kmer-counting Goto Github
Some thing interesting about kmer-counting
Some thing interesting about kmer-counting
kmer-counting,Count kmers with a more efficient (faster) hash table
User: alexpreynolds
kmer-counting,Count canonical kmers with Abseil C++ `absl::flat_hash_map`
User: alexpreynolds
kmer-counting,Count canonical kmers with Boost C++ `boost::unordered_map` hash table
User: alexpreynolds
kmer-counting,Count canonical kmers with Emil Ernerfeldt's emilib::HashMap
User: alexpreynolds
kmer-counting,Count canonical kmers with Malte Skarupke's bytell_hash_map hash table
User: alexpreynolds
kmer-counting,Count canonical kmers with Google sparse_hash_map
User: alexpreynolds
kmer-counting,Count canonical kmers with STL unordered_map
User: alexpreynolds
kmer-counting,Obtain k-mer counts from fastx files
User: angelovangel
kmer-counting,This is the Machine learning Project Repo.
User: anonymous7code
kmer-counting,kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
User: anuradhawick
kmer-counting,fast and lightweight counting of short k-mers
Organization: arriam-lab2
kmer-counting,Minimizer counting and analysis
Organization: at-cg
kmer-counting,K-mer counting algorithms and count-data utilities for the BioJulia framework
Organization: biojulia
kmer-counting,DNA classifier using Natural Language Processing. Used K-mer method to convert sequence strings into fixed size words
User: chaitanyakaul97
kmer-counting,dna/rna alignment classifier
User: crosenth
kmer-counting,a ruby function for kmer iterations and kmer graph preparation. estimates the kmers and gives occurrences as tab delimited
User: gauravcodepro
kmer-counting,Implementation of k-mer counting algorithms BFCounter and experimental implementation of Misra-Gries. The goal is to use as little memory as possible.
User: gzhoffie
kmer-counting,Fast and memory-efficient "single pass" kmer counting
User: jacobjmarks
kmer-counting,Represents sequences files in fasta format in terms of their kmer counts.
User: jdisset
kmer-counting,Very large scale k-mer counting and analysis on Apache Spark.
User: jtnystrom
Home Page: https://jnpsolutions.io/software/
kmer-counting,Select representative sequencing data sets.
Organization: kingsford-group
kmer-counting,MPI version of Sparc
User: lizhen0909
kmer-counting,Kmer counter is written in GO Lang v 1.16.5 To install GO on Windows, follow the instructions at https://golang.org/doc/install 4 GO implementation of N-mer counter in DNA sequences which tests for validity of input. It reads in file name (of fasta file) It reads the size length (kmer length) for which counts are desired and writes out to file, counts of all overlapping kmers of size 1 through the specified input. It checks if fasta file is empty amd whether kmer length is specified.
User: lvn3668
kmer-counting,
User: mjoppich
kmer-counting, k-mer similarity analysis pipeline
Organization: nf-core
Home Page: https://nf-co.re/kmermaid
kmer-counting,Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
Organization: passionlab
kmer-counting,vue app with flask REST api to process genomic data
User: petermchale
kmer-counting,Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
User: pfeiferd
kmer-counting,A selection of databases for Genestrip
User: pfeiferd
kmer-counting,A kmer-based homology searching tool
User: qile0317
Home Page: https://qile0317.github.io/KmerGMA.jl/stable/
kmer-counting,Counts the number of occurrences of each k-mer in a DNA string
User: rejoyc-cs
kmer-counting,fast and comprehensive k-mer counting package
User: slowikj
Home Page: https://slowikj.github.io/seqR/
kmer-counting,A program to read sequences from fastq file and find out the frequency of all substrings with length k across all sequences in the file.
User: smhuprikar
kmer-counting,A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
User: suchapalaver
kmer-counting,Bioinformatics 101 tool for counting unique k-length substrings in DNA
User: suchapalaver
kmer-counting,Counting Bloom Filter Algorithm to count kmers
User: tayhuiyi
kmer-counting,🧮 🔢 Generate multi-sample k-mer count matrix from WGS
User: tseemann
kmer-counting,Various python projects.
User: victoria-r
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