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关于使用报错
你好。
我在使用的时候,发生了如下报错:
192.168.3.110 - - [27/Apr/2021 20:34:35] code 404, message File not found
192.168.3.110 - - [27/Apr/2021 20:34:35] "GET /favicon.ico HTTP/1.1" 404 -
并不能进行任何操作。
我查到一个类似的报错:https://stackoverflow.com/questions/19901955/simplehttpserver-code-404-message-file-not-found
但我能力有限,也并不能完全理解回答的意思。
请问该如何解决这个报错呢?
谢谢
error with add_annotation_from_dat.py
Hi,
When I run :python add_annotation_from_dat.py expanded_dup.blastp.best uniprot_plants.dat
there is such an error:
Traceback (most recent call last):
File "add_annotation_from_dat.py", line 22, in
GO_RECORD = re.findall(r"GO; (GO:\d+); ([F|P|C]):.?; (.):",record)
File "/pub/anaconda3/envs/py36/lib/python3.6/re.py", line 222, in findall
return _compile(pattern, flags).findall(string)
TypeError: cannot use a string pattern on a bytes-like object
I do not know what is wrong, please help, thank you very much
bcbio安装问题
error when using "generate_conf.py" to prepare input files of WGDI
Genome sequences and annotation gff files of Apostasia shenzhenica and Phalaenopsis equestris were downloaded from:
https://www.ncbi.nlm.nih.gov/genome/66931
ftp://ftp.genomics.org.cn/pub/Orchid_Phalaenopsis_equestris/
python generate_conf.py -p Ash Ashenzhenica.genome.fasta Ashenzhenica.gene.gff
python generate_conf.py -p Peq Pequestris.genome.fasta Pequestris.gene.gff
Errors:
1.
Traceback (most recent call last):
File "generate_conf.py", line 117, in
chrom=chrom,lens=lens,count=gene_count[chrom]), file=len_file)
KeyError: 'KZ451892.1'
Traceback (most recent call last):
File "generate_conf.py", line 89, in
gene_dict, tx_pos_dict, CDS_dict= parse_gff( args.gff )
File "generate_conf.py", line 67, in parse_gff
tx_parent = re.search(r'Parent=(.*?)[;\n]',content[8]).group(1)
AttributeError: 'NoneType' object has no attribute 'group'
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