Topic: viral-genomics Goto Github
Some thing interesting about viral-genomics
Some thing interesting about viral-genomics
viral-genomics,Kamal_Acharya
User: acharyak184
viral-genomics,Viral genome assemble and characterisation
User: agudeloromero
viral-genomics,🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics
User: akarazeev
Home Page: https://devpost.com/software/lauzhack19
viral-genomics,EDA of virus orthologous groups (VOGs) from VOGDB and eggNOG
User: alepfu
viral-genomics,Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.
User: alepidoptera7
viral-genomics,bvas: bayesian viral allele selection
Organization: broadinstitute
viral-genomics,Repository for analyses of HHV-6 reactivation using genomics
User: caleblareau
viral-genomics,Sequence Analysis Pipeline for the IRIDA Platform for Viral Genomes
Organization: cancogen-v
viral-genomics,Data portal and API for Center for Viral Systems Biology (CViSB) data
Organization: cvisb
Home Page: https://data.cvisb.org/home
viral-genomics,A bioinformatics tool for designing primers and generating consensus sequences in viral genome analysis. It supports processing multiple aligned genomic sequences, optimizing primers, and visualizing genome annotations.
User: encacen21
viral-genomics,High accuracy single molecule Nanopore reads using the MrHAMER pipeline
User: gallardo-seq
Home Page: https://doi.org/10.1093/nar/gkab231
viral-genomics,A reference guided assembler of highly variable viral genomes
User: gfedonin
viral-genomics,Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
Organization: giffordlabcvr
Home Page: http://hcv-glue.cvr.gla.ac.uk
viral-genomics,UC Davis: Data Science for Biologists - R markdown
User: hello-im-aryss
viral-genomics,QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture
Organization: hzi-bifo
viral-genomics,Visualize microbial evolution at the SNP level!
User: jonas-fuchs
viral-genomics,Viral genome assembly pipeline for WGS using ONT
Organization: khourious
viral-genomics,VIral GEnome ASsembly pipelines for WGS
Organization: khourious
Home Page: https://khourious.github.io/vigeas/
viral-genomics,Python tool for relative mutation rate of different genes across viral strains.
User: mkayasth
viral-genomics,Assembly and intrahost / low-frequency variant calling for viral samples
Organization: nf-core
Home Page: https://nf-co.re/vipr
viral-genomics,Human RNA virus genotyping
Organization: public-health-bioinformatics
viral-genomics,Reference-based alignment and sequence database search of SARS-CoV-2 genomes.
Organization: quadram-institute-bioscience
viral-genomics,Detect Hepatitis A Virus Infection Clusters
User: schultzm
viral-genomics,Linked Multilocus Genotype by Sequencing (LMGSeq) applied to high-throughput quantification of genetic exchange among diverse human Influenza A virus strains
User: sociovirology
viral-genomics,HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
Organization: sttlab
viral-genomics,RecombinHunt (alias for the software contained in this repository) is a Python library implementing a data-driven novel method for identifying contributing lineages and breakpoints in recombinant viral sequences.
User: tomalf2
viral-genomics,This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.
Organization: ucsd-ccbb
viral-genomics,Hunting for CMV and HHV-6 in cfDNA sequence
User: vpeddu
viral-genomics,a set of tools for viral amplicon schemes
User: will-rowe
viral-genomics,Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Organization: wrightonlabcsu
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