Topic: gatk4 Goto Github
Some thing interesting about gatk4
Some thing interesting about gatk4
gatk4,Repository for scripts used to estimate guppy (Poecilia reticulata) mutation rate.
User: 0-ioniel-0
gatk4,Master's Thesis Project
User: abhimanyumandal
gatk4,snakemake pipeline for gatk running on binder
User: alperyilmaz
gatk4,A pipeline that calls variants on a group of BAM files. Category:Multi-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/gatk-variantcalling
gatk4,A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/germline-DNA/
gatk4,A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/RNA-seq/
gatk4,simple pipeline for processing exome sequencing data using BWA and GATK4
User: christacaggiano
gatk4,Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
User: digo4
gatk4,A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Organization: esr-nz
gatk4,Variant Calling Pipeline Using GATK4 and Nextflow
Organization: gencorefacility
gatk4,An interactive visualization tool for GATK CNV analysis. Displays modeled segments and raw read/allele counts.
Organization: genome-spy
Home Page: https://genomespy.app/segmentmodel/
gatk4,A pipeline for mitochondrial mutation calling
User: jvandinter
gatk4,A Snakemake workflow for variant calling using GATK4 best practices
User: kevin-wamae
gatk4,Snakemake based workflow for calling Variants on RNA-Seq data in a joint calling mode
User: khandaud15
gatk4,Evolutionary genomics of chromosomal inversions in Atlantic herring
User: mafaldasferreira
gatk4,Repository for variant calling utilizing bioinformatics tools and databases
User: mansikath
gatk4,Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Organization: nf-core
Home Page: https://nf-co.re/sarek
gatk4,An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
User: nickhir
gatk4,School project for the Computational Genomics (2018/2019) course, which is a part of the Master studies at the School of Electrical Engineering, University of Belgrade.
User: nikolapeja6
gatk4,Pipeline for calling and analyzing variants from RNA-Seq data
Organization: pavlidislab
gatk4,Variantes genéticas de amostras de Rattus norvegicus utilizando GATK4
User: renatopuga
gatk4,RNASeq and Call Variants
User: renatopuga
gatk4,GATK 4 Mutect2 Somático
User: renatopuga
gatk4,Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
User: sebastian-gregoricchio
gatk4,Sentieon DNAseq
Organization: sentieon
gatk4,Snakemake pipeline for variant calling using GATK
User: sherineawad
gatk4,This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)
User: sherineawad
gatk4,Create required reference genome index files for WGS data analysis
Organization: sydney-informatics-hub
gatk4,Map and post-process your bams for SNP calling
User: tdayris-perso
gatk4,Steps that I followed setting up Windows Subsystem for Linux 2 (WSL2) and Docker to run NGS data analysis using GATK.
User: thalitacamelo
gatk4,Beginner's tutorial for GATK4 workflow on variant calling from RNA-seq.
User: x-zang
gatk4,The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.
User: yenon118
Home Page: https://github.com/yenon118/snakyVC
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