Topic: snakemake-pipeline Goto Github
Some thing interesting about snakemake-pipeline
Some thing interesting about snakemake-pipeline
snakemake-pipeline,MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards
User: ac1513
snakemake-pipeline,Final project submission for IS477 course at University of Illinois Urbana-Champaign. Utilized Snakemake for efficient creation of research objects, applying semester's knowledge on data curation, management, and reproducibility.
User: aisaiahpellecer
snakemake-pipeline,ChIPseq pipeline for Pasini's lab written in snakemake
User: andreamariani-am
snakemake-pipeline,CutNtag pipeline for Pasini's lab written in snakemake
User: andreamariani-am
snakemake-pipeline,RNAseq pipeline for Pasini's lab written in snakemake
User: andreamariani-am
snakemake-pipeline,Small snakemake pipeline to explore RNA-Seq data with deepTools.
User: angrymaciek
snakemake-pipeline,A small snakemake pipeline to perform quality analysis of RNA-Seq data with FastQC.
User: angrymaciek
snakemake-pipeline,RNA-Seq data analysis: Quantification, Differential Gene Expression, Differential Transcripts Usage
User: angrymaciek
snakemake-pipeline,A snakemake workflow to perform Alternative Splicing analysis from RNA-Seq with SUPPA2.
User: angrymaciek
snakemake-pipeline,My personal snakemake pipeline for VAST-TOOLS execution
User: angrymaciek
snakemake-pipeline,Project for apaQTL MS. The workflowr project apaQTL by brimittleman
User: brimittleman
Home Page: https://brimittleman.github.io/apaQTL/
snakemake-pipeline,pipeline to perform gbs and genetic fitness analysis
User: carolinapb
snakemake-pipeline,Pipeline to map short reads from several samples to a reference genome
User: carolinapb
snakemake-pipeline,population structural variant calling with smoove
User: carolinapb
snakemake-pipeline,Template directory for creating a snakemake pipeline
User: carolinapb
snakemake-pipeline,Short read mapping and variant calling
User: carolinapb
snakemake-pipeline,🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.
User: cmkobel
snakemake-pipeline,A minimal Snakemake pipeline.
User: cnuahs
snakemake-pipeline,Hi-C processing pipeline in snakemake.
User: dohlee
snakemake-pipeline,A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Organization: esr-nz
snakemake-pipeline,A Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.
Organization: esr-nz
snakemake-pipeline,bacterial strain identification
User: fatmakahveci
snakemake-pipeline,Simple template for running snakemake with R
User: fritzbayer
snakemake-pipeline,utility for writing the snakemake files with faster iterations.
User: gauravcodepro
snakemake-pipeline,
Organization: ht-diva
snakemake-pipeline,Pipeline for analyses of multiple pathogens, like SARS-CoV-2 with positivity rate analyses
Organization: institutotodospelasaude
Home Page: https://www.itps.org.br/pesquisa/monitoramento-de-patogenos-respiratorios
snakemake-pipeline,Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.
Organization: laborberlin
snakemake-pipeline,Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).
Organization: laborberlin
snakemake-pipeline,Snakemake pipeline for assembling and annotating bacterial genomes from NGS paired-end data.
User: makrez
snakemake-pipeline,3' UTR cleavage site identification from the Mouse Cell Atlas
Organization: mayrlab
snakemake-pipeline,Simple Snakemake RNA-Seq pipeline
User: michalbukowski
snakemake-pipeline,a Snakemake version of distiller - the Open2C Hi-C mapping workflow
Organization: open2c
snakemake-pipeline,An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
Organization: openomics
Home Page: https://openomics.github.io/modr/
snakemake-pipeline,A pipeline for study of genetic instability of tumors.
User: paularthurm
snakemake-pipeline,
User: raveancic
snakemake-pipeline,Python & R multi-language data analysis pipeline
User: reina0101
snakemake-pipeline,
User: rendrick27
snakemake-pipeline,Work at NIST: snakemake workflow to get short tandem repeats from WGS GIAB samples. R script for downstream processing and concordance
User: sammedmandape
snakemake-pipeline,Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.
User: sebastian-gregoricchio
Home Page: https://sebastian-gregoricchio.github.io/snHiC/
snakemake-pipeline,A comprehensive quality-control and quantification RNA-seq pipeline
User: skchronicles
Home Page: https://www.sudosight.com/RNA-seek
snakemake-pipeline,Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
Organization: smith-chem-wisc
Home Page: https://smith-chem-wisc.github.io/Spritz/
snakemake-pipeline,This repo contains scripts and workflows for performing bulk transcriptomics analyses
User: svpipaliya
snakemake-pipeline,A repository for RNA-seq workflow
User: williamjeong2
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