Topic: snakemake-pipeline Goto Github
Some thing interesting about snakemake-pipeline
Some thing interesting about snakemake-pipeline
snakemake-pipeline,MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards
User: ac1513
snakemake-pipeline,Final project submission for IS477 course at University of Illinois Urbana-Champaign. Utilized Snakemake for efficient creation of research objects, applying semester's knowledge on data curation, management, and reproducibility.
User: aisaiahpellecer
snakemake-pipeline,ChIPseq pipeline for Pasini's lab written in snakemake
User: andreamariani-am
snakemake-pipeline,CutNtag pipeline for Pasini's lab written in snakemake
User: andreamariani-am
snakemake-pipeline,RNAseq pipeline for Pasini's lab written in snakemake
User: andreamariani-am
snakemake-pipeline,Small snakemake pipeline to explore RNA-Seq data with deepTools.
User: angrymaciek
snakemake-pipeline,A small snakemake pipeline to perform quality analysis of RNA-Seq data with FastQC.
User: angrymaciek
snakemake-pipeline,RNA-Seq data analysis: Quantification, Differential Gene Expression, Differential Transcripts Usage
User: angrymaciek
snakemake-pipeline,A snakemake workflow to perform Alternative Splicing analysis from RNA-Seq with SUPPA2.
User: angrymaciek
snakemake-pipeline,My personal snakemake pipeline for VAST-TOOLS execution
User: angrymaciek
snakemake-pipeline,Project for apaQTL MS. The workflowr project apaQTL by brimittleman
User: brimittleman
Home Page: https://brimittleman.github.io/apaQTL/
snakemake-pipeline,pipeline to perform gbs and genetic fitness analysis
User: carolinapb
snakemake-pipeline,Pipeline to map short reads from several samples to a reference genome
User: carolinapb
snakemake-pipeline,population structural variant calling with smoove
User: carolinapb
snakemake-pipeline,Template directory for creating a snakemake pipeline
User: carolinapb
snakemake-pipeline,Short read mapping and variant calling
User: carolinapb
snakemake-pipeline,🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI
User: cmkobel
snakemake-pipeline,A minimal Snakemake pipeline.
User: cnuahs
snakemake-pipeline,Hi-C processing pipeline in snakemake.
User: dohlee
snakemake-pipeline,A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Organization: esr-nz
snakemake-pipeline,A Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.
Organization: esr-nz
snakemake-pipeline,bacterial strain identification
User: fatmakahveci
snakemake-pipeline,Simple template for running snakemake with R
User: fritzbayer
snakemake-pipeline,write as many snakemake files and with much faster iterations and completely from the single files or from the list of the files with the path appended. This will make your writing the snakemake easier
User: gauravearn
snakemake-pipeline,
Organization: ht-diva
snakemake-pipeline,Pipeline for analyses of multiple pathogens, like SARS-CoV-2 with positivity rate analyses
Organization: institutotodospelasaude
Home Page: https://www.itps.org.br/pesquisa/monitoramento-de-patogenos-respiratorios
snakemake-pipeline,Snakemake pipeline for assembling and annotating bacterial genomes from NGS paired-end data.
User: makrez
snakemake-pipeline,3' UTR cleavage site identification from the Mouse Cell Atlas
Organization: mayrlab
snakemake-pipeline,Simple Snakemake RNA-Seq pipeline
User: michalbukowski
snakemake-pipeline,A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
Organization: moiexpositoalonsolab
Home Page: http://grene-net.org
snakemake-pipeline,An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
Organization: openomics
Home Page: https://openomics.github.io/modr/
snakemake-pipeline,A pipeline for study of genetic instability of tumors.
User: paularthurm
snakemake-pipeline,Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
User: pmenzel
snakemake-pipeline,Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
User: pmenzel
snakemake-pipeline,
User: raveancic
snakemake-pipeline,Python & R multi-language data analysis pipeline
User: reina0101
snakemake-pipeline,
User: rendrick27
snakemake-pipeline,Work at NIST: snakemake workflow to get short tandem repeats from WGS GIAB samples. R script for downstream processing and concordance
User: sammedmandape
snakemake-pipeline,Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.
User: sebastian-gregoricchio
Home Page: https://sebastian-gregoricchio.github.io/snHiC/
snakemake-pipeline,A comprehensive quality-control and quantification RNA-seq pipeline
User: skchronicles
Home Page: https://www.sudosight.com/RNA-seek
snakemake-pipeline,Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
Organization: smith-chem-wisc
Home Page: https://smith-chem-wisc.github.io/Spritz/
snakemake-pipeline,This repo contains scripts and workflows for performing bulk transcriptomics analyses
User: svpipaliya
snakemake-pipeline,A repository for RNA-seq workflow
User: williamjeong2
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