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getzlab-lnphs_utils

Utility functions for running code in getzlab-LNP and getzlab-PHS

getzlab-pcawg-mutsig2cv_nc

MutSig2CV for noncoding analysis as run for the PCAWG drivers paper (Rheinbay et al. 2020)

getzlab-pcawg-power_calculations

Power calculations for PCAWG drivers paper

getzlab-pcawg-pvalue_combination

p value combination for PCAWG drivers

getzlab-phs

Code to reproduce the figures and results from Hess et al. 2019

gh-action-pypi-publish

GitHub Action, for publishing distribution files to PyPI

gisaid-cli

Docker container with GISAID-provided CLI tools

gistic2

Genomic Identification of Significant Targets in Cancer (GISTIC), version 2

git-secrets

Prevents you from committing secrets and credentials into git repositories, with a Broad twist.

gitdescribe-maven-plugin

Sets the maven attribute 'describe' to the current git describe output. Currently directly executes git describe, no JGit implementation yet.

github-action-consul-template

installs consul template on runner

github-action-get-previous-tag

Get the previous tag

github-action-push

⬆️ Push changes made by actions right back into the current repository.

github-action-template-render

github-app-creds-example

Example of using GitHub App credentials

github-maven-package-example

github-tag-action

A Github Action to tag a repo on merge.

github-vault-action-usage

Testing GitHub Actions Vault integration

glmm-de-genes

Differential expression testing of dependent data

gnomad-blog

Blog for the gnomAD project

gnomad-browser

Explore gnomAD datasets on the web

gnomad-browser-toolkit

Components for building genomic data browsers

gnomad-constraint

gnomad-mitochondria

gnomad-project-template

Cookiecutter template for gnomAD projects using Python and Hail

gnomad-readviz

scripts that precompute minibams and other files necessary for the readviz feature of https://gnomad.broadinstitute.org

gnomad_bigquery

General usage bigquery library and gnomAD-specific bigquery import/export

gnomad_chets

Phase of compound heterozygotes in gnomAD

gnomad_local_ancestry

Hail batch pipeline and scripts for local ancestry inference

gnomad_lof