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sherlock

DSP DevOps's deployment source-of-truth service

shibboleth-service-provider

A generic Shibboleth service provider service for use in Shibboleth authentication schemes.

signatureanalyzer-gpu

GPU implementation of ARD NMF

simclr3d

PyTorch implementation of SimCLR: A Simple Framework for Contrastive Learning of Visual Representations by T. Chen et al.

single-cell-annotation

Red blood cell annotation

single-cell-images

Tools for reading and processing images of single cells

single_cell_analysis

Documents used for workshops on single cell analysis

single_cell_classification

Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles

single_cell_portal

Tutorials, workflows, and convenience scripts for Single Cell Portal

single_cell_portal_core

Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

singlecell_morphological_analysis

Basic analysis and visualization of CellProfiler single cell profiles.

skopy

slats

App to browse and etract data from parquet file

sma-finder

A tool for diagnosing SMA using exome, genome or targeted sequencing data

smn_analysis

Code for analyzing SMN1/SMN2

snakemake-broad-uger

Snakemake profile to execute workflows on the Broad Institute UGER cluster

snoop

snowmansv

Structural variation and indel detection using rolling local string graph assembly

snpir-python

Python implementation of the original SNPiR code

snputil

matlab utlity functions for GISTIC2 and related copy number repositories

sntr

Repository for code relating to the Social Network Transmission Reconstruction group.

soerenbe-syslog_ng

syslogng puppet module

somatic-benchmark

Tools for comparing somatic variant calling tools.

spames

spam an elasticsearch with a zillion concurrent updates

sparklespray

Easy batch submission of adhoc jobs onto GCP

speady

spiderdot

accessing isilon information for data curation

spliceai-lookup

Website for checking SpliceAI and Pangolin scores:

split_merge_pl

spr_create_dotmatics_adlp_file

Project for processing SPR Data for upload to Dotmatics via ADLP