broadinstitute Goto Github PK

chef-docker

Chef Cookbook for Docker

chef-shibboleth_idp

Chef cookbook to install and configure the Shibboleth SAML IdP

chowser

Tools to munge genomic data in Scala

chronos

Modeling of time series data for CRISPR KO experiments

circleci-orb-bits-puppet

CircleCI Orb for common Puppet components used by BITS

circleci-orb-bits-python

CircleCI Orb configuration for Python using Pipenv

cisregmodels

Scripts for building computational models of gene regulation with tensorflow

clastr-internal

Tool to seach for similarity between a cell line STR markers and those stored in the Cellosaurus knowledge resource

clio

cloud-cost-management

This repo is abandoned...new home https://github.com/DataBiosphere/hamm

cma-search

A free website for searching OMIM records by keyword or genomic interval https://cma-search.broadinstitute.org (previously called omim-search)

cmi-cas-rest-client

A RestClient for integrating with applications protected by CAS Single-Sign-On (http://www.jasig.org/cas)

cms

Composite of Multiple Signals: tests for selection in meiotically recombinant populations

cms2

CMS 2.0

cms2-docker-component-stats

Docker image spec for computing component stats

cms2-pipelines

cms2-work

Gather in one place various repos and files related to CMS2.0 work.

cn_correlation

A simulated annealing approach to correlating copy number change events in cancer.

cnvsingle

single cell/nuclei allele specific copy number

codecov-bash-uploader

Verified CodeCov Bash Uploader script in light of https://about.codecov.io/security-update/

coessentiality

Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)

communityamaretto

CommunityAMARETTO: A network-based computational tool for the discovery of shared and distinct regulatory mechanisms across biological systems

comodo_rest_api

A simple pythonic interface to the Comodo CCM REST API

comokit-model

A GAMA (http://gama-platform.org) model on the assessment and comparisons of intervention policies against the CoVid19 pandemics

comparatorbytrait

comparing-moa-representations

A systematic comparison of perturbation screening approaches to capture mechanisms-of-action (MOA) representations

computational-resources

Computational training resources for GPP R&D

concensus2

concensusglm

Microbial fitness inference from barcode counts.

consensus_svs

firecloud tasks to make consensus SV lists (VCF and txt) using Breakpointer