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reaper

Cloud workflow post-processor

reasoner

Reasoner

rec-seq

regevlab-jupyter-docker

regional_missense_constraint

Code to calculate regional missense constraint

repeatvariantsinccle

This repo is about the analysis if repeat variants in CCLE for the paper: "Werner Helicase Prevents Cell Death in Cancers with Microsatellite Instability by Resolving Large-scale Expanded (TA)n Repeats" of Wietmarschen et. al.

repository-dispatch

A GitHub action to create a repository dispatch event

repurposing

Processing scripts for repurposing manuscript

researchkit

ResearchKit is an open source software framework that makes it easy to create apps for medical research or for other research projects.

retry

Retries a GitHub Action step on failure or timeout

revere

Alerting and management for Terra's status, incidents, and uptime

rigerj

Java implementation of RIGER and other gene enrichment methods, useful for RNAi and CRISPR screen analysis.

rl_reasoner

reinforcement learning reasoner

rna_mutect_1.0-1

rna_seq_sars_cov_2

Human and SARS-CoV-2 RNA-Seq workflow

rs3_manuscript

Relevant code for Rule Set 3 manuscript

rvblr

This is a reimplementation of the RVBoost code.

sabeti-dhis2-clinical

Standalone visualization connected to DHIS2 to visualize clinical and genomic data of infection programs

sabeti-dhis2-clinical-express

Express version of the sabeti-dhis2-clinical

sabeti-host-txnomics-internal

sabetilab-remote-config

configuration files for systems deployed at collaborating sites in West Africa (Ansible, route53, autossh)

sails-mongo

MongoDB adapter for Sails.js

sam

workbench identity and access management

sassy

A simple assay simulator

satmut_asm_parser

satmut_variantlibrary_designer

sc2-cmu-study

Analysis scripts and notes related to a study of SARS-CoV-2 transmission at Colorado Mesa University 2020-2021

sc2-rmd

sc2-seq-dash-public

SARS-CoV-2 sequencing dashboard code

sc2-variation-scripts

scripts related to analyzing variation in SARS-CoV-2