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sc2-variation-scripts

scripts related to analyzing variation in SARS-CoV-2

sc_analysis_portal

sc_topics

Interface for topic modeling on Single Cell Data

scala-baseimage

Base image for Scala programs and services

scalable_analytics

Public collaboration of Scalable Single Cell Analytics

scalacache

Simple caching in Scala

scaraplate

Scaraplate is a wrapper around cookiecutter which allows to repeatedly rollup project templates onto concrete projects.

scientific-python-2.7

scientific python 2.7 with intel MKL built into virtual machines. Docker, AMI, Virtualbox, Vmware, KVM and more

scion

A make-like tool to automatically paste pieces of file contents together into new files

scn2a_base_editing

scp-ingest-pipeline

File Ingest Pipeline for Single Cell Portal

scp-rails-baseimage

Docker image builder repository to build Phusion/Passenger & Single Cell Portal docker images using managed GCR Ubuntu base image

scred

Python implementation of REDCap API

scripts_notebooks_fossa

Scripts used inside notebooks for @fefossa projects. Mainly to generate PhD results.

scrna-seq

security_monkey

Security Monkey

segmentation

A playground to test things out for preliminary research

segmentation_experiments

BSRP summer internship project attempting to streamline nucleus segmentation

selene

BGZ/TBI Reader

sensu-chef

Sensu Chef cookbook.

sensu-community-plugins

Sensu community plugins & handlers, sharing is good.

seqc_multiqc

Fork of MultiQC from July 2018 for seQuoia bacterial genomics infrastructure.

seqr

web-based analysis tool for rare disease genomics

seqr-helm

Helm charts for the seqr project

seqr-loading-pipelines

hail-based pipelines for annotating variant callsets and exporting them to elasticsearch

sequence-upload-to-gs

Incremental upload of Illumina sequencing runs to GS from a companion computer, or directly from Linux-based Illumina sequencers

sequoia

A framework for diverse omics workflows, primarily focused on QC, processing and analysis of bacterial genomic sequencing sets.

servicenow-powershell

This PowerShell module provides a series of cmdlets for interacting with the ServiceNow REST API

setup-chart-releaser

Set up your GitHub Actions workflow with a specific version of chart-releaser

setup-helmfile

Setup helmfile action